Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8072 147 5e-30 seq6003 104 6e-17 seq16375 95.1 3e-14 seq1309 95.1 3e-14 >seq8072 Length=1211495 Score = 147 bits (162), Expect = 5e-30 Identities = 163/216 (75%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| |||||||||||||| ||| || ||| Sbjct 11495 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTGGAC 11554 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || |||||||| ||||| || ||||| Sbjct 11555 ACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAGCAG 11614 Query 178044 CGACTTATCTT-CGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || ||||| ||| || || ||||| |||||||| | ||| | | || || ||| | Sbjct 11615 AGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACAT 11674 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||| || || || || ||||| || |||||||| Sbjct 11675 CCCAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 11710 >seq6003 Length=190268 Score = 104 bits (114), Expect = 6e-17 Identities = 157/220 (71%), Gaps = 19/220 (9%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| | || || | || || |||||||| || Sbjct 5543 AGGTCAAAATGC---AAATCTTCGTGAAGTCCCTGACCAGCAAGACCATCACCCTGATGG 5599 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AA 178026 |||| || ||| ||||||||||||| ||||| ||||| ||||| ||||| || | Sbjct 5600 TGGA--GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCAC 5657 Query 178027 TC---CCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 || || || ||||||| || || || || || ||||| |||||||| | | Sbjct 5658 TCCCACCCCCCGACCAGC--------ATGTTTGCTGGCAAGCAGCTGGAAGATGGCCGCA 5709 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||| || |||| ||| |||| ||||| || || ||||| Sbjct 5710 CTCTCTCCAATTACAACATCCAGAAAGAGTCTACCCTGCA 5749 >seq16375 Length=211985 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/140 (76%), Gaps = 9/140 (6%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT-CCCTCCG----- 178034 |||||||||||||||||||| ||||||||||| ||||| || || ||||| | Sbjct 123668 GACACCATCGAGAACGTCAAGGGCAAGATTCAGGATAAAGAGGGCATCCCCTCTGCCCAC 123727 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| |||| |||| || || || ||| | ||||||| | |||||| | ||| Sbjct 123728 GACCAGCAGCGAC---TCTTTGCTGGCAAGCAGTTGGAAGATGACCGCACTCTTTCTGAT 123784 Query 178095 TATAACGTCCAAAAAGAATC 178114 || ||| |||| ||||| || Sbjct 123785 TACAACATCCAGAAAGAGTC 123804 >seq1309 Length=2182545 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/177 (73%), Gaps = 15/177 (8%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || ||||| || || || || || || | |||||| ||||||| || || | Sbjct 1955062 CAAATCTTTGTGAAGACCCTGACCGGCAAGACCACCACCCTA-AGGTGGA--GCCCAATG 1955006 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA---TCCCTC------ 178032 | ||||||||||||||||| ||||| ||||||||||| || | |||||| Sbjct 1955005 ATACCATCGAGAACGTCAAGACCAAGATCCAGGACAAAGAGGGCACCCTCCCTCCCCCTC 1954946 Query 178033 -CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 | ||||||| ||||| ||||| | || || ||||| |||||||| | |||||| Sbjct 1954945 ACACACCAGCAGCGACTCATCTTTGAGGGCAAGCAGCTGGAAGATGGCCGCACTCTT 1954889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198067297878948