Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9155 98.7 9e-16 seq8072 93.3 4e-14 >seq9155 Length=358325 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| |||| ||| ||| ||||| ||||| | ||| || ||||| | Sbjct 307804 AGACGAAGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGG 307745 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| |||||||| | || ||||| | || | || ||| Sbjct 307744 CCATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCC 307685 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | || ||||| | || Sbjct 307684 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTA 307625 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || |||||||| ||||| || || || |||||| Sbjct 307624 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATATGCATG 307586 >seq8072 Length=1211495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | ||||||||||| || ||| |||||| | ||||| ||||| || Sbjct 11719 CCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGAC 11660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCG-AATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || ||||||||||| ||| || ||||| | ||| || || | || Sbjct 11659 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGG 11600 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | ||||| ||| ||| || ||| | | |||||| | || || Sbjct 11599 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAAC 11540 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 11539 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460181781930400