Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq14035 172 6e-38 seq13819 102 8e-17 seq26070 96.9 4e-15 seq30635 84.2 2e-11 >seq14035 Length=1410301 Score = 172 bits (190), Expect = 6e-38 Identities = 495/749 (66%), Gaps = 43/749 (6%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 ||||| || ||||| || || || || || || ||||| |||||||| ||||| ||||| Sbjct 226432 TTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 226373 Query 16754 G-TAG-CTGAAAATATT-TTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAAT 16810 || |||||||| | ||| || ||||| ||| || | || || || |||||| Sbjct 226372 TCTACTCTGAAAATCCTGTTAAAG---CCCAGCTCGAGCATAAGCCTGTCTGCCACAAAT 226316 Query 16811 TCTATATATTGGCAC------ATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGA 16864 || | | | ||| ||||| ||||||||| || || || || || | | Sbjct 226315 TCAGTGTG--GCCACCACGTCATTAAAGTGCAGTTCATCCCAATGAGTTTCACAGGCAAA 226258 Query 16865 GCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACT 16921 || ||| | | | ||| |||| || || ||| ||||| | | ||| Sbjct 226257 GCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGC---CTTGATAATGGTTTCCTTTACT 226201 Query 16922 CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGT 16981 | | ||| || ||| | ||| || || || ||||||||||| || || || || || Sbjct 226200 CTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGGCAAAGTCACAGTGC 226141 Query 16982 AATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGT 17041 || ||||| ||||||||||||||||| || |||||||| | ||||||||| ||||| | Sbjct 226140 AAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCAT 226081 Query 17042 TTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCA 17101 ||||| | ||| ||||| | || || || ||||||||||| || || || || ||||| Sbjct 226080 TTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC-AATGCA 226022 Query 17102 AACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161 || || | ||||| | || | || || |||| ||| | |||| Sbjct 226021 AAAGCTGCAACACGTTCTCCATATGCAGCTTC-TTGT------CCCAACGCAAGGCCCAG 225969 Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTT 17219 || || || ||| | ||| ||||||||| ||| | |||| | || ||| |||| Sbjct 225968 TCAGCCTT---CTTCACACAAGGCATCGTTTCAATGACATTAAAGAGAAATTCCCTTT-- 225914 Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT----G 17275 || | | || | | || || || || || |||||| ||||||| |||| | Sbjct 225913 -CTTTGG---AATCTTTAATGTGTCAATAAGAAGACTGTACGTTTCGGAACGTATAAAAG 225858 Query 17276 TTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335 || |||| ||| | || | || || || || |||||||||| |||| || ||| | Sbjct 225857 TTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAATTTAAAATTCTTGG 225798 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 ||||| ||| | | ||||| || || ||||| || ||||| || || || |||| Sbjct 225797 CTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGCAAAGAAAGCCAGA 225738 Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGG 17424 | ||| || |||| | | || ||||| Sbjct 225737 ACATGGGATATAAAATCTCTCTCTTCCGG 225709 >seq13819 Length=2138633 Score = 102 bits (112), Expect = 8e-17 Identities = 197/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || || | ||||||||| || |||||||| ||| |||| || || || || || || || Sbjct 1575178 AGAAGACAGTACATTTCAGAATGTATGTTTTCCGTGGCAATTTGGAAGCCATAGAAACAG 1575119 Query 17309 CGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATG 17368 ||||||| | ||||||||||| | |||||| ||| ||| ||||| || || || Sbjct 1575118 CGGGCTTATGTAATTTGAACTTCTTGGCTGAATCGCTCCACTACGTTTTCATTTACTGTG 1575059 Query 17369 CCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA 17428 ||||||||| | || | |||| || | | | |||||| | || || ||| | Sbjct 1575058 TGGTCGCTCGCTTCAAAGGAAGCCAGAATGAGAT--ACAAAATATCTCTCTTCGGGTTTC 1575001 Query 17429 AGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTA 17488 || | ||||| || | || ||||| | ||| || || || | ||||||| Sbjct 1575000 AGGGCTTCCCAGTGCTGGATGTCCTTGGAGAGATCTACCTCCTCAGCTGTCCAAACGGGG 1574941 Query 17489 GCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || || || ||||| ||||| ||||||| |||| ||||||| Sbjct 1574940 TCCTTAGCTTTCTTGTACATCTTCCAGATATCATGATATTCACTGGGGAA 1574891 >seq26070 Length=15207027 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| |||||||| || || |||||||| | || |||||| ||||||||||| Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||||||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 17106 C 17106 | Sbjct 5605465 C 5605465 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || || ||||||||||| || |||||||| |||||||| || || Sbjct 5606696 ATGTAAGTGTCAATAAGAAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 5606755 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||| | ||||||||||| Sbjct 5606756 AAGCCATAGAAACAGCGGGCTTCGGTAATTTGAACTTC 5606793 >seq30635 Length=1530594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || ||||||||||| ||||| || ||||| || | || ||||| |||| ||||||| Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 | ||||||||| || || || || || |||||||| || || || || | ||||| || Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGC 527549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516543010663680