Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq14035 165 8e-36 seq30635 107 2e-18 seq26070 93.3 4e-14 >seq14035 Length=1410301 Score = 165 bits (182), Expect = 8e-36 Identities = 482/732 (66%), Gaps = 33/732 (5%) Strand=Plus/Minus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| || |||| || | ||||| |||||||| || || || || | || |||||||| Sbjct 226451 TTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTC 226392 Query 15973 CATAAAATCAAAGGGATTAG-TAG-CTGAAAATA-TCTTAGAGTACCCCAGTTCCGTAAC 16029 ||| || ||||| ||||| || |||||||| | ||| || ||||| || | Sbjct 226391 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAG---CCCAGCTCGAGCAT 226335 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACA----CATTAAGTCGCAATTAATTCCTA 16085 | || ||||| |||||||| | | || |||||| ||| || || || | Sbjct 226334 AAGCCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAA 226275 Query 16086 TAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 | ||| || || | ||| | | | | | || ||||| || || | ||| Sbjct 226274 TGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTTGATAA 226215 Query 16146 TGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 || | || | ||| || || ||| | || ||||| || ||||| ||||| | Sbjct 226214 TGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGG 226155 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | ||||| || || | || || ||||||||||||||||| |||||||| || | || | Sbjct 226154 CAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGG 226095 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| ||||| |||||| | ||||||||| | ||||| || || |||||||| || | Sbjct 226094 GCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTC 226035 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | || ||| |||||||||| | ||||| | || | ||| |||| | | || | Sbjct 226034 CTTCCACA-ATGCAAAAGCTGCAACACGTTCTCCATATGCAGCTTCTT--GTCCCAACGC 225978 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA--A 16443 | |||| || || || || | |||| ||||||||| ||| | |||| | Sbjct 225977 A-----AGGCCCAGTCAGCCTT---CTTCACACAAGGCATCGTTTCAATGACATTAAAGA 225926 Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 || ||| |||| | |||| | ||| | || ||||| || | ||||||| |||| Sbjct 225925 GAAATTCCCTTTCTTTGGAATCT---TTA---ATGTGTCAATAAGAAGACTGTACGTTTC 225872 Query 16504 TGAGTGTAT----GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 || |||| ||| || | ||| | || | |||||||| || || || |||| | Sbjct 225871 GGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAA 225812 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 ||| | ||| | |||| ||| ||| ||| ||||| || || || ||||| || | Sbjct 225811 TTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTG 225752 Query 16620 CAAAAAACGCCA 16631 |||| || |||| Sbjct 225751 CAAAGAAAGCCA 225740 >seq30635 Length=1530594 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| || |||||||| | || ||||| |||| ||||| Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||| ||||| ||||||||||| || |||||||| || || || |||| ||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 527549 CCACCACTCTTTCC 527536 >seq26070 Length=15207027 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||| |||||||| || |||||||| || | || ||||| |||||||||||| Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| | ||||| || || |||||||| || || || |||| |||||||| Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 5605465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510423688024320