Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq15815 174 1e-38 seq10112 129 5e-25 seq5010 98.7 8e-16 >seq15815 Length=3425397 Score = 174 bits (192), Expect = 1e-38 Identities = 487/741 (66%), Gaps = 11/741 (1%) Strand=Plus/Minus Query 18607 GAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 || ||||||||||||| | || | || || || || |||| || || |||| |||| Sbjct 2367016 GAGATGAATTTCCTCTGCTCACAGCCAAACGAGTATTCTGGAAGGGTGTTTTGGAGGAGT 2366957 Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACA 18726 || |||||||||| || || || || | |||||||| || | | | | | Sbjct 2366956 TGCTATGGTTTATTAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAGGGGGGAGAAAA 2366897 Query 18727 TATGGGATATATACGGATCGAGCAAATTTCTAAATAGGA-ATGGCTTCCATAAAAGACAC 18785 | |||||| | ||||| | | ||||| | || | || ||| | | || Sbjct 2366896 TCTGGGATGCCAATGGATCCCGGGACTTTCTGGACAGCCTAGGGATTCTCCACTCGGCAG 2366837 Query 18786 ACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAA 18845 | |||||||| | || |||| || |||||||||| ||||||||||| || || ||| Sbjct 2366836 AAAGGGGACCTGAGTCCAGTTTATGGTTTCCAGTGGATGCATTTTGGAGCAGACTACAAA 2366777 Query 18846 GACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 || | || | || | | |||||| || ||||||| | ||||| ||||| Sbjct 2366776 GATATGGATTCTGATTACTCAGGTCAAGGAGCAGACAAGCTGCAGAAAGTTATTGATACC 2366717 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || ||||| ||| | || || || || || | | ||||| ||||| ||| | Sbjct 2366716 ATCAAAACCAACACTGACAGAAGA------ATCATGTGTGCCTGGAACCCAAAAGATCTT 2366663 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 || | |||| || || | ||||| | || |||| || || | || || || Sbjct 2366662 CCTCTGATGGCGCTGGCTTCTTGTCAAGTCCTCTGCTAGTTCTATGTGGTGAATGGGGAG 2366603 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 | ||||||||| | |||||||| || || | || |||||| || || || |||||||| Sbjct 2366602 CTGTCCTGCCAACTTTACCAGAGGTCAGGAGGTACGGGCCTGGGTGTGCCCTTCAACATC 2366543 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145 || | |||| | || | |||||| | || || | |||| || || | || ||| Sbjct 2366542 GCCAGCTATGTCCG-CTAAGCTACATGATCGCACACATCACAGACCTGAAGTCAGGTGAT 2366484 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205 || | | || |||| |||||| || ||||| ||||||| || || | | ||| | Sbjct 2366483 TTTGTAC-TATTTTGGGAGATGCATATGTTTACCTGAATCACATTGAGCCACTGAAAATT 2366425 Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA- 19264 ||||| ||| |||| ||||||||| || ||| || |||| | |||| Sbjct 2366424 CAGCTCCAGCGAGAACCAAGACCTTTTCCAAAGCTCGGAATCTTTTGAAACATT-CAGAC 2366366 Query 19265 TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccT 19324 | | | ||||| ||| || || |||||| |||| |||||||||||||| || | | Sbjct 2366365 TGTTGATGACTTCAAAGTTGAAGACTTTCAGATTGAAGGATATAATCCACATCCAACTAT 2366306 Query 19325 AAAAATGGAAATGGCTCTTTA 19345 ||||||||||| ||| |||| Sbjct 2366305 TAAAATGGAAATAGCTGTTTA 2366285 >seq10112 Length=11852372 Score = 129 bits (142), Expect = 5e-25 Identities = 222/317 (70%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT-TGCTG 19089 |||||| | |||||| | | || ||||||||||| || || || |||||||| ||| Sbjct 4836419 CTGCCAGCTGTACCAGGGGGCAGGAGATATGGGCCTGGGTGTGCCCTTCAACATCTGC-A 4836361 Query 19090 GATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAA 19149 | ||||| | || |||||||| |||| || | ||||| || || | || ||||| Sbjct 4836360 GCTATGCCCCACTCACCTACATGATAGCACACATCACAGGCCTGAAGTCAGGTGATTTCG 4836301 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 | ||||| |||| ||||||| | ||||| ||||| |||| | | | ||| | |||| Sbjct 4836300 TACATACTTTGGGAGATGCACGTGTTTACCTGAATTATATCTAGCCACTGAAAATTCAGC 4836241 Query 19210 TAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATA 19268 | || |||| ||||||||| |||||| | || |||| || ||| ||| Sbjct 4836240 TCCAGGGAGAACCAAGACCTTTTCCAAAGCTTAAACTCCTTTGAAAGGT-TGAGACTATT 4836182 Query 19269 AACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAA 19328 | | | ||| ||| || ||||| |||| ||||||||||||||||| | | ||| Sbjct 4836181 GATCATTCCAAAATGGAAGACATTCAGATTGAAGGATATAATCCACACCCAACTATTAAA 4836122 Query 19329 ATGGAAATGGCTCTTTA 19345 |||||||| || |||| Sbjct 4836121 ATGGAAATAGCAGTTTA 4836105 >seq5010 Length=4126613 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || || | | || ||||| ||||| | || || || | ||| Sbjct 1433324 ATGGCACTGCCTCCTTGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGTCC 1433265 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || || |||||||||||||| || || |||||||| || | Sbjct 1433264 TGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTTGGTGTGCCCTTCAACATCGCCAGC 1433205 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||||| || || |||||||| | || || | ||||| || || Sbjct 1433204 TATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 1433161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398749428829920