Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14035 237 2e-57 seq32167 149 7e-31 seq29155 127 2e-24 seq30635 120 4e-22 seq26070 111 2e-19 seq2702 111 2e-19 >seq14035 Length=1410301 Score = 237 bits (262), Expect = 2e-57 Identities = 525/777 (68%), Gaps = 29/777 (4%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTT-TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887 ||||| ||||| || | ||| |||||||| || | ||||| || || || || || || Sbjct 226469 GACATCACTCCTATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCC 226410 Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 ||| | ||| |||||||||||||| || ||||||| || | | || || ||||| Sbjct 226409 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAA 226350 Query 23948 TCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCA--TCATTTCA 24005 |||| || || | || ||||| ||||| || | | | || ||||| | Sbjct 226349 GCCCAGCTCGAGCATAAGCCTGTCTGCCACAAATTCAGTGTG-GCCACCACGTCATTAAA 226291 Query 24006 ---CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 24062 || ||||| || || ||||| || || | |||| | | || | || || | || Sbjct 226290 GTGCAGTTCATCCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATC 226231 Query 24063 GAGACCGCGTCTGTTATAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAA 24119 || || | | ||||| | | ||||| | | || ||| | | | Sbjct 226230 CTCACAGCCT---TGATAATGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGG 226174 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||||| ||| || || || ||||| | |||||| ||||| || || | ||| Sbjct 226173 TGCTTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCA 226114 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| |||||||| || || | || || ||||| ||||| || ||||| Sbjct 226113 TTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAA 226054 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || ||||||||||| |||||||| || ||||| || || | ||||||||| | Sbjct 226053 GAACCAGAAAAGAAGATTCCTTCCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCA 225995 Query 24300 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 || || ||| | || | ||||| || |||||| || ||||||||||| || Sbjct 225994 GC---TTCTTGTCCCAACGCAAG-GCCCAGTCAGCCTTC---TTCACACAAGGCATCGTT 225942 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || || ||||||||||| | | |||| || ||||||| |||| ||||| | | Sbjct 225941 TCAATGACATTAAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATGTGTCAATAAGA 225886 Query 24420 AGACTATACATTTC----CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 ||||| ||| |||| || || || |||||| | ||| | ||| | || |||||||| Sbjct 225885 AGACTGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACA 225826 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTAT 24535 | || || ||||| | | |||| | |||| || | || |||||||| ||||| Sbjct 225825 GCGGGCTTCCGTAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTAT 225766 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || ||||| |||||||| || |||| ||||| |||||||| | | || || || Sbjct 225765 GCCATCACTCGCTGCAAAGAAAGCCAGAACATGGGATATAAAATCTCTCTCTTCCGG 225709 >seq32167 Length=1788516 Score = 149 bits (164), Expect = 7e-31 Identities = 308/457 (67%), Gaps = 25/457 (5%) Strand=Plus/Plus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 || ||||| || || |||| ||| | |||| || ||||| |||||||| | |||||| Sbjct 592600 TAATACATCCCAGTCTTTAAACCCTGCTTCCAGCCATAAAAGTGCATACTGATGAGTTTG 592659 Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966 ||| | || || | ||| |||| |||| ||| || |||||||| ||||| || || Sbjct 592660 CCATAGTTAGGCTCAGTGATACGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 592719 Query 52967 CTGTCTGCAG-CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 53025 || | || | ||||||| | || || || || | |||||| | | ||| ||||||| Sbjct 592720 CTCT-TGAATACCATTTTGAGGACAGTTTTCTGAGAGATTTCCTACACAGTCTTATAAAG 592778 Query 53026 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAAT 53082 | || | || || |||| | || | ||||| ||| ||||| | | ||| | Sbjct 592779 CTGATTCAGGTCATCAGGAATTTCTGATATGTTCTGGATAAATCCATTGCATGCAATACT 592838 Query 53083 CCTA-TTCTTG------------ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTC 53129 | || ||| ||||| |||||| | | | | |||| || Sbjct 592839 CTGGGTTTTTGTTTTTTTTTTAAATCTCTTCATTCAAGATT-------CCAATAAATCTT 592891 Query 53130 TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATAT 53189 | || | || |||| || | ||||||||||| |||| ||||| | ||||| || | Sbjct 592892 TCAGTAAGTGAGGATATACAATCTGAAATTCTCCTAACAAAACTCTTCAAGTGTGGATGT 592951 Query 53190 TACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 53249 | |||||||| |||| | |||||||||||| |||| ||| ||||||||||| ||||| | Sbjct 592952 TGCTGGTATAACGTTCAATAGACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAG 593011 Query 53250 GCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA 53286 |||| | || | | |||||| ||||| | ||| || Sbjct 593012 GCATCAGGGCAATAAGTAAACTGTTTCTTATACCATA 593048 >seq29155 Length=1778819 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 1091681 TACCTGAAATTCTCCCGACAAAACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAAT 1091622 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||||| || | ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 1091621 GGACTCATTATTCCCTAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAA 1091562 Query 53269 ACTATTTCTAAGACCGTA 53286 ||| ||||| | ||| || Sbjct 1091561 ACTGTTTCTTATACCATA 1091544 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || |||||||||||||| || |||||| ||| | || || || |||||||| | Sbjct 1094720 TCCAGCCATAAAAATGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1094661 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||| ||||| || || || || || |||||||| | | || | Sbjct 1094660 TTAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATTTTGAGAACAGTTT 1094601 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||||| | |||| | || || |||| Sbjct 1094600 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1094550 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || ||||| || || | || || ||||| ||||| || ||||| | || || | Sbjct 1088819 CATAAGTTTCGTAGGGGCCATGCTCCTTGGCTAGGTCACAGCTGGCCTCCAGGGCTCCAT 1088760 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||| ||||||||||||| |||||| | ||| ||||| | || ||||| |||| Sbjct 1088759 AATAAATAGTTTCGAAGATCTGCTTATTCAATAATTGAGCTTCTTGACTCTCAAAAGGAT 1088700 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | || ||||| || ||||||| ||||| || ||||| || || || | || | Sbjct 1088699 ATCTCATCAGGATAAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGGTGGC 1088640 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 1088639 GTTTATTTGA 1088630 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||||||||||| |||||||| || |||||||| || ||| Sbjct 1075800 GTACCAGCATTGAAGAGAGTAGGAGAAGCGTGTGTAAACCACTTCTCAGAAAGAAGGTTG 1075741 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| || || || | ||| ||||| || ||||| || || | || | ||| ||| Sbjct 1075740 TACGTTTCAATTGCAGCGTCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 1075681 Query 54545 ATGTGCTGAGGTCTTTCA 54562 || ||||| ||||||||| Sbjct 1075680 ATATGCTGTGGTCTTTCA 1075663 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||| || || | || ||||||| || | Sbjct 1083472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGATCTCGGGCACG 1083413 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| |||||||| | || |||||| | | || || ||||||| Sbjct 1083412 TTGCTCTTCCTTTCCTGTGTTCTTTTTTAAGTCAAGGAACTCAAAGATGTCTAAATGCCA 1083353 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 1083352 AGGTTCCAGGTAAAT 1083338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || ||||| || |||| | Sbjct 1069427 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAAACAGCGATTCTCGCAGCTAAGA 1069368 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || ||| | || || | |||||| || | Sbjct 1069367 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCAA 1069308 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1069307 GTTCCACTGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1069262 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||| | || ||| || ||||| || ||||| || ||||||||||| | || || || || Sbjct 1086489 ATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCCCAGGTTCTGCTGGTT 1086430 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||||| |||||| | ||| || || || ||| |||| |||||||| || |||| || Sbjct 1086429 GCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCAGTCTCTGTCTGAGA 1086370 Query 53869 TTCTATAATCGCTTTCCA 53886 || || || || | ||| Sbjct 1086369 CTCGATGATGGCATACCA 1086352 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 |||||||||||||| || || ||||| || ||||| || || |||| ||||||||||||| Sbjct 1088259 TCTGGAATAGGATAGTAGTTTATATCAATGATTTTGTTCAGATTTCGGACAATTACTTTG 1088200 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || ||| || ||| ||| || ||| | | | ||| |||| |||| Sbjct 1088199 GTGACTTCAGCCAGCTTCTTAAAGTCATATGTGTGTTCTGGTGTGACATACATATTCAGA 1088140 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | ||| |||| |||||||| || |||| Sbjct 1088139 GCCAGAGAAGCCAAGTTACAAACTGCAACCT 1088109 >seq30635 Length=1530594 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | ||||||||||| |||||||||||||||||||| || |||||||| Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGCC 527548 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 527547 ACCACTCTTTCCCC 527534 >seq26070 Length=15207027 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || |||||||| || || || ||||| || || || || | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 5605465 CTACAACACGTTCTCC 5605480 >seq2702 Length=368809 Score = 111 bits (122), Expect = 2e-19 Identities = 378/592 (64%), Gaps = 73/592 (12%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||||| ||| || || || ||||||| |||||| ||||| || || | || Sbjct 317473 TGCTTGAACATCAGACAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTGATAAGCTCT 317532 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| || || || ||||| || | || ||||| Sbjct 317533 TTGGAAAATGT----------------------TTCTTGAGCCAGAACAGTGATGCAAAA 317570 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || ||||||||||| |||||||| || || ||||| || | || ||||||||| Sbjct 317571 GAACCAGAAAAGAAGATTCCTTCGACAGCAGCAAAAGCTACAACATGTTCTCCATAG--- 317627 Query 24300 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA---TT 24356 ||| | |||| | ||||||| | || ||| || Sbjct 317628 ----------GTAGCTTCTTT-GTCCCCAATCCA-----------ATGCAGGGCCCAGTT 317665 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || || ||||| |||||| | | |||| || |||||||| || || ||||| Sbjct 317666 GTTTCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGAATCTTTAATGTAAGTGTCAATA 317725 Query 24417 AAAAGACTATACATTTCCGAATG--AATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 ||||||||||||||| ||||| || |||| ||||| ||||| || || ||||||| Sbjct 317726 CGAAGACTATACATTTCAGAATGGCAA---TTTCCATGGCAATTTGGAAGCCATAGAAAC 317782 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGC--TAAATTTTCATTCAC 24532 | | || |||| || |||||| | ||| | |||| || |||||||| || Sbjct 317783 AGTAGGTTTCCATAATTTGAACTTCTTGGCTGAAT--TGCTGCATCAAGTTTTCATTTAC 317840 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || || ||||| ||||||| | | || | ||| ||||| |||| | | ||||| Sbjct 317841 TAGGCCATCACTCACTGCAAAGGAAGTCAGAATATGAGATATAAGATATCTCCCTTCTGG 317900 Query 24593 TGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 || ||||| || || | || || || | || ||| || ||| ||||||||| Sbjct 317901 -CTTCAAGGATTCC---CAGTGCTTTTCCTTGGAAAGATTCACCTCCTCCGCTGTCCAAA 317956 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 24703 | | ||| || ||||| | ||||||||| || ||| ||| || Sbjct 317957 AGAAGGCC---------TTGTACATCTGCCAGATGTCTTGGTATGCAATGGG 317999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592571442516480