Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq28953 242 4e-59 seq26206 96.9 4e-15 seq28336 86.0 8e-12 >seq28953 Length=2983190 Score = 242 bits (268), Expect = 4e-59 Identities = 256/337 (76%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||| ||| Sbjct 1351513 AGCAGGGCTTCTATGTCAGGCTCGATGTCGATGGTCCGAAAGCGGCGGCTGTACCTACGC 1351454 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || | ||||||| || || | ||||||||| ||||||||||| | |||||||||| Sbjct 1351453 ACCGGAATACCGTCAGGCCCAACAAGGAACTTCTCAAAGTTCCAGGCAATGTCGTTGCGG 1351394 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||| ||| | |||||| ||| ||||| | |||||| || Sbjct 1351393 CACACTGGAGACCAAATGATGGATTTAGGGTCGTTCATGAGCGCAGTGGGGTCGTCACTG 1351334 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| | |||| |||||| ||||||||||| |||||||| || ||| | ||||| || ||| Sbjct 1351333 GGCACTGGCAAGGCCTCCCGTAGGAAGGCAAAGAGCGGGTGAGCCTTCGCACCATTCACC 1351274 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| || | || || |||||||| ||| ||||| |||| | ||| Sbjct 1351273 TCGCACTTCTCGAACAGTGTGAAATTGGGCTCGAACCCGCCACCAGGTCGGATATACTTG 1351214 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| || ||||| | |||| ||| || |||| Sbjct 1351213 AGCGAATTCAGAATCTCTTCGTTCTTGGCATTCTCCT 1351177 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| || |||||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 1350961 CCTGGTGTCCAAACTGGTTGCACGGGAAACCGAGCACCACCAGGCCGCGGGGCCCGAGGC 1350902 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||| |||||||| | ||||| |||||| ||| | |||||||| ||||| | Sbjct 1350901 GCCTCTGCAGGTCGTTCATTTCGGTGTAATCCCGGGTGGTGGTGCCTCAGAGCGACGCCA 1350842 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||| | ||| |||||| ||| |||| | |||||| || || || ||| Sbjct 1350841 CATTCTCAATGAGTAGCACCTTGCCCCGGAAGGAGCCCAGGCTCACCGGCTCCCCGCCGA 1350782 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||| | || |||||||||||||| Sbjct 1350781 CCAGCGGGTGCGCGGAGAAGGCGTACAC 1350754 >seq26206 Length=6358800 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/286 (69%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 4925604 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCCCGCCTGC 4925546 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | |||||| Sbjct 4925545 TGGTGCACCTCTTCCCTGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGTA 4925486 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| | ||||| ||| | | || |||| ||||| Sbjct 4925485 GTGGCTCCCTGGGCAAGAAGCAGT-TGGACCCTTCCCGCATCAGGCTGATCCGTCACTAC 4925427 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 || ||| |||| ||||| ||| || || |||||||||| ||||| ||| Sbjct 4925426 GTACAGCTGCTCTACCCGCGGGCTAAGAATGACCGCGTGTGGACGCTGGAGTTCGTGGGC 4925367 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGACACAGGCGC 50693 ||||| ||||||||||||||||| | || | ||| |||||| Sbjct 4925366 AAGCTGGATGAGCGCTGCCGGCGCCGGGACACA-GAACAGAGGCGC 4925322 >seq28336 Length=4684348 Score = 86.0 bits (94), Expect = 8e-12 Identities = 231/345 (67%), Gaps = 10/345 (3%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||| ||||| | | | ||| ||| || | | ||||| | || Sbjct 605436 GAGGAGGCGCTTGATGTCAGGCTCGATGTTGATGGTATGGAAGGTGCGACTGTAGCGTCG 605495 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | ||| || || | || | | ||||||||| |||||||||||||| || ||| Sbjct 605496 GAAGGGTTCCCCTTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCG 605555 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 || ||||||| ||| ||||||| ||| ||| ||| ||| | | | ||| || | Sbjct 605556 GCGCACTGGACTCCACATGATGAGCTTGGGATCGGTCATGAGAGAGAACGGGTCATC-AT 605614 Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTT 83292 | | | || | || | || | ||| |||| || | |||||| | | ||| || || Sbjct 605615 AAGGGTAGGGA-AGCTTGTCCTTCAGGTAGGCAAAAACAGGATGTTCATTCTGC-CCATT 605672 Query 83293 GACCTCGCACTTCTCG--AAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACG 83350 |||||| ||||| | | ||||| | ||| | |||| | | || ||||||| ||||| Sbjct 605673 GACCTCACACTTTTGGGTAAGAG--TGAAGGTGGGCTGGTATCCACTCCCAGGGCGGACA 605730 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | ||| ||| | |||||| ||||||| ||| |||||| Sbjct 605731 TACTTGAGGCTGTTTAGGATCTCCTCATTCTGACAGTTCTCCTGG 605775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607617438839040