Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq23020 132 4e-26 seq16386 118 9e-22 seq9583 118 9e-22 seq61872 109 5e-19 seq17823 109 5e-19 seq73829 100 2e-16 seq33511 84.2 2e-11 >seq23020 Length=748909 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||||||| || ||||| ||||| | ||| || || | || || |||||| Sbjct 60948 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGT 60889 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| || | ||| |||||||| |||||| Sbjct 60888 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTG 60829 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || || | ||||||| |||| ||| |||||||||||||| Sbjct 60828 GCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 60769 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || || || || |||||||||| Sbjct 60768 AGGGTCTTCACGAAGATCTGCATTTTGA 60741 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| || || | || || || | || |||||||| Sbjct 61176 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGC 61117 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || | || || ||||||||||| || | ||| |||||||| |||||| Sbjct 61116 TTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTG 61057 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || || | ||||||| |||| ||| |||||||||||||| Sbjct 61056 GCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 60997 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || || || || ||||| Sbjct 60996 AGGGTCTTCACGAAGATCTGCAT 60974 >seq16386 Length=4700455 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| |||| ||||||||||| || ||||| ||||| | |||||| || |||| Sbjct 632468 GAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 632409 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || |||||||||| | | | ||| || ||||| Sbjct 632408 TTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 632349 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | || |||| ||||||| |||| ||| ||||| Sbjct 632348 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 632289 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 632288 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 || ||||| ||| ||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 631328 GATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTC 631269 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || ||||||||||| | | | ||| || ||||| Sbjct 631268 TTCCAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 631209 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | || |||| ||||||| |||| ||| ||||| Sbjct 631208 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 631149 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||||| || | || || || || || |||||| Sbjct 631148 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 631115 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 || ||||| ||| ||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 631556 GATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTC 631497 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || |||||||||| | | | ||| || ||||| Sbjct 631496 TTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 631437 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | ||||||| ||||||| |||| ||| ||||| Sbjct 631436 CTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 631377 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 631376 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 || ||||| ||| ||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 631784 GATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTC 631725 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || |||||||||| | | | ||| || ||||| Sbjct 631724 TTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 631665 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | ||||||| ||||||| |||| ||| ||||| Sbjct 631664 CTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 631605 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 631604 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 || ||||| ||| ||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 632012 GATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTC 631953 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || |||||||||| | | | ||| || ||||| Sbjct 631952 TTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 631893 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | ||||||| ||||||| |||| ||| ||||| Sbjct 631892 CTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 631833 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 631832 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 || ||||| ||| ||||||||||| || ||| | ||||| | |||||| || |||| Sbjct 632240 GATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTC 632181 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||| || ||||| ||| | || || |||||||||| | | | ||| || ||||| Sbjct 632180 TTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTC 632121 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | | | ||||||| ||||||| |||| ||| ||||| Sbjct 632120 CTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 632061 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || || || || ||||| Sbjct 632060 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq9583 Length=785227 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | ||| ||| | || |||||||| Sbjct 67153 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCTTCCAGCTGC 67094 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| || | ||| |||| ||| |||||| Sbjct 67093 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTG 67034 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| || || | ||||||| ||||| ||| ||||||||||| || Sbjct 67033 GCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTC 66974 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || || || || |||||||||| Sbjct 66973 AGGGTCTTCACGAAGATCTGCATTTTGA 66946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | ||| || ||| | || ||||| | Sbjct 67381 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCTTCCAGTGGC 67322 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || | || || ||||||||||| || | |||||||||||| |||||| Sbjct 67321 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTG 67262 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGG 21150 ||| | | | | || | | ||||||| ||||| ||| ||||||||||||| Sbjct 67261 GCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGG 67204 >seq61872 Length=227 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| |||| ||||||||||| || ||||| ||||| | |||||| || |||| Sbjct 55 GAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 114 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 115 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 174 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 ||||||| || || | | | || |||| ||||||| Sbjct 175 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 217 >seq17823 Length=3576200 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | ||| | ||| | || |||||||| Sbjct 944371 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTGC 944312 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||||| | || || ||||||||||| ||| | ||| |||||||| ||| || Sbjct 944311 TTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTG 944252 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | | | || || | ||||||| |||| ||| ||||||||||| || Sbjct 944251 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 944192 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || ||||| || || |||||| Sbjct 944191 AGGGTCTTCACAAAGATCTGTGTTTTGA 944164 >seq73829 Length=246 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| ||||||||||| || ||||| ||||| | ||| || ||| | || |||||| | Sbjct 235 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCTTCCAGCGGC 176 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || | || || ||||||||||| || | |||||||||||| |||||| Sbjct 175 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTG 116 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGG 21150 ||| | | | | || | | ||||||| ||||| ||| ||||||||||||| Sbjct 115 GCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGG 58 >seq33511 Length=8354299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| | || |||||||| || || ||||| ||||| | ||||| | | ||| Sbjct 8199647 AGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCC 8199588 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || | || || | ||||||||| | | |||||||||||| Sbjct 8199587 TCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTCC 8199528 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| || | || |||||| Sbjct 8199527 TAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTC 8199468 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || || ||||| || ||| | ||| Sbjct 8199467 TTGCCAGTCAGGGTCTTCACAAAGATCTGCGTCTTG 8199432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421461649490816