Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq15815 138 8e-28 >seq15815 Length=3425397 Score = 138 bits (152), Expect = 8e-28 Identities = 414/629 (66%), Gaps = 15/629 (2%) Strand=Plus/Plus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACAT 97066 |||| ||||| || || |||| ||||| | | || | ||||||||||||| | Sbjct 2366394 TTGGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGT 2366453 Query 97067 AAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAA--TCAGTGACATG 97124 ||| | |||||||| ||| | | | ||| || || | ||| | || |||| || Sbjct 2366454 AAACATATGCATCTCCCAAAATA-GTACAAAATCACCTG--ACTTCAGGTCTGTGATGTG 2366510 Query 97125 GGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCAT 97184 |||||||| | ||| || | ||||| || ||||| || ||||| || || ||| | Sbjct 2366511 TGCGATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGT 2366569 Query 97185 ATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGAC 97243 | | |||| || || || | || ||||| |||| |||| ||| |||||| |||| | Sbjct 2366570 ACCTCCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCAC-CACATAGAACTAGC 2366628 Query 97244 TCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACA 97303 | || ||||| | | || |||||| |||| |||| ||||| ||||||| Sbjct 2366629 AGAGGACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTTGGGTTCCAGGCACACA 2366688 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 | | ||||||| || || ||| || | ||||||| ||| | | || | | | Sbjct 2366689 TGA---TTCTTCTGTCAGT---GTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGT 2366742 Query 97364 CAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCC 97423 | | |||| || |||| | | | ||| || ||||||||||||||| ||| Sbjct 2366743 CTGCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCC 2366802 Query 97424 ATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA-ACCAAGCTTA 97482 | ||||| |||||||| || | ||||| |||| | | | |||| || || | Sbjct 2366803 ACTGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTGGAGAATCCCTAGGCTG 2366862 Query 97483 TCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCT 97542 || | | || || |||||||| |||||||| || | | | || | | || ||| Sbjct 2366863 TCCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCT 2366922 Query 97543 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAAT 97602 || | || ||||| | |||||||| | ||| || |||| |||||| |||| ||| Sbjct 2366923 TTAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAAT 2366982 Query 97603 ACTCTCTTAGTTGTTAAGAGAGGAAAATC 97631 |||| || | ||| | |||||||| || Sbjct 2366983 ACTCGTTTGGCTGTGAGCAGAGGAAATTC 2367011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346129004784320