Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23967 104 3e-17 seq4683 104 3e-17 seq31108 102 9e-17 seq25443 100 3e-16 seq16386 100 3e-16 seq10252 98.7 1e-15 seq104679 91.5 2e-13 seq33511 86.0 7e-12 >seq23967 Length=614369 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 15195 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 15136 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 15135 ACTATACTAACGAGGAT 15119 >seq4683 Length=705728 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 227903 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGAGATACTCACCACTA 227844 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 227843 TACTAACGAGGA 227832 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 214208 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 214149 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 214148 ATACTAACGAGGA 214136 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 281286 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 281340 >seq31108 Length=10710224 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7776765 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7776706 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 7776705 TACTAACGAGGAGTGA 7776690 >seq25443 Length=1475344 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 48607 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 48548 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 48547 ATACTAACGAGGA 48535 >seq16386 Length=4700455 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 613792 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 613733 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 613732 TACTAACGAGGAT 613720 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| ||| |||||| || || ||||| || | ||| || || |||| || Sbjct 632465 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTC 632406 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||||||||| | | || ||| |||||| Sbjct 632405 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632346 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | ||||| || | ||||| || | |||||||| || Sbjct 632345 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632286 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 632285 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 601145 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 601086 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 601085 TACTAACGAGGA 601074 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| ||| |||||| || || |||| || | ||| || || |||| || Sbjct 631325 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631266 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || | ||||||||||| | | || ||| |||||| Sbjct 631265 CAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631206 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | ||||| || | ||||| || | |||||||| || Sbjct 631205 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631146 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || ||||| || ||||| |||||| Sbjct 631145 GCCAGTCAGGGTCTTCACGAAGATCTGCATT 631115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| ||| |||||| || || |||| || | ||| || || |||| || Sbjct 631553 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631494 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||||||||| | | || ||| |||||| Sbjct 631493 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631434 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | || || || | ||||| || | |||||||| || Sbjct 631433 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631374 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 631373 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| ||| |||||| || || |||| || | ||| || || |||| || Sbjct 631781 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631722 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||||||||| | | || ||| |||||| Sbjct 631721 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631662 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | || || || | ||||| || | |||||||| || Sbjct 631661 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631602 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 631601 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| ||| |||||| || || |||| || | ||| || || |||| || Sbjct 632009 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631950 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||||||||| | | || ||| |||||| Sbjct 631949 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631890 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | || || || | ||||| || | |||||||| || Sbjct 631889 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631830 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 631829 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| ||| |||||| || || |||| || | ||| || || |||| || Sbjct 632237 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 632178 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||||||||| | | || ||| |||||| Sbjct 632177 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632118 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| ||| |||| || | | || || || | ||||| || | |||||||| || Sbjct 632117 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632058 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 632057 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq10252 Length=5655956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3328944 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3329003 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3329004 TACTAACGAGGA 3329015 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 735406 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 735465 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 735466 ATACTAACGAGGA 735478 >seq104679 Length=361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 79 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 20 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 19 ATACTAACGAGGA 7 >seq33511 Length=8354299 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42970 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 43029 ||| ||||| | || ||| ||| || || || ||||| || | || |||| || | Sbjct 8199649 GCAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCAT 8199590 Query 43030 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 43089 | || |||||||| || | || || || ||||||||||| | | | || ||||||| Sbjct 8199589 CCTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGT 8199530 Query 43090 CCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 || ||| || |||| || | | || || || | ||||| || | ||||||| Sbjct 8199529 CCTAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGG 8199470 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 | ||||| || || ||||| |||||||| ||| Sbjct 8199469 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8199438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570709874945280