Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq33490 86.0 9e-12 >seq33490 Length=7594977 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||||||| || | ||| | || || || ||| ||| | | || || || Sbjct 4306963 CCACCACGAAGTCTTAACACAAGATGAAGGGTGGACTCCTTTTGATGT--TGTAGTCAGA 4307020 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| || || || || |||||||| |||| || |||||||| ||||| Sbjct 4307021 CAAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGG 4307080 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 4307081 AATTCCTTCCTTATCCTG 4307098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742086040657920