Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq16386 114 8e-21 seq23020 102 5e-17 seq61872 98.7 6e-16 seq33511 96.9 2e-15 seq17823 96.9 2e-15 seq9583 93.3 3e-14 >seq16386 Length=4700455 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||||||| ||| |||| Sbjct 632467 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 632408 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||||| || || ||| |||||||||| | | | || ||| ||||| Sbjct 632407 TCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCC 632348 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 632347 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 632288 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 632287 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 632255 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||| ||||||||||||| ||| |||| |||| ||||||||||| || Sbjct 631534 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 631475 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || ||| |||||||||| | | | || ||| ||||| |||||| ||| | | Sbjct 631474 ATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 631415 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || ||||| Sbjct 631414 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 631355 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 631354 AAGATCTGCATC 631343 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||| ||||||||||||| ||| |||| |||| ||||||||||| || Sbjct 631762 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 631703 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || ||| |||||||||| | | | || ||| ||||| |||||| ||| | | Sbjct 631702 ATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 631643 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || ||||| Sbjct 631642 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 631583 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 631582 AAGATCTGCATC 631571 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||| ||||||||||||| ||| |||| |||| ||||||||||| || Sbjct 631990 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 631931 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || ||| |||||||||| | | | || ||| ||||| |||||| ||| | | Sbjct 631930 ATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 631871 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || ||||| Sbjct 631870 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 631811 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 631810 AAGATCTGCATC 631799 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||| ||||||||||||| ||| |||| |||| ||||||||||| || Sbjct 632218 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 632159 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || ||| |||||||||| | | | || ||| ||||| |||||| ||| | | Sbjct 632158 ATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 632099 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || ||||| Sbjct 632098 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 632039 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 632038 AAGATCTGCATC 632027 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||| ||||||||||||| ||| |||| |||| ||||||||||| || Sbjct 631306 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 631247 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||||| | | | || ||| ||||| |||||| ||| | | Sbjct 631246 ATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 631187 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || |||| |||||||| ||||| || || || ||||| Sbjct 631186 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 631127 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 631126 AAGATCTGCAT 631116 >seq23020 Length=748909 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || ||| | || |||| ||||||||| ||||| Sbjct 61164 TCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 61105 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| || | || ||||||||| ||||| ||| | | Sbjct 61104 ATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 61045 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| |||||||| || || ||||| Sbjct 61044 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 60985 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 60984 AAGATCTGCAT 60974 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| ||||| ||| | || Sbjct 60957 AGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 60898 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| || || || |||| ||||||||| || | || ||||||||| Sbjct 60897 TCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 60838 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 60837 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 60778 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 60777 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60746 >seq61872 Length=227 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||||||| ||| |||| Sbjct 56 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 115 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| ||| | || ||||||||| Sbjct 116 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 174 >seq33511 Length=8354299 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||||| | || |||||||| |||||||||||||| || | ||| || Sbjct 8199648 CAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATC 8199589 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTG 34294 |||| |||||| || | || || |||||||||||||| || || | || |||||| Sbjct 8199588 CTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGG--ATGCCTTCCTTG 8199531 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | || | || | || | | || || || | |||||| Sbjct 8199530 TCCTAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATG 8199471 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || || ||||||||||||||| || Sbjct 8199470 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCGTC 8199435 >seq17823 Length=3576200 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| | || | || |||| ||||||||| | ||| Sbjct 944359 TCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTGCTTGCCCGTGAAG 944300 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||||| || || ||| | | Sbjct 944299 ATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTGGCCTTCACGTTC 944240 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || |||||| Sbjct 944239 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 944180 Query 34379 AAGATCTG 34386 |||||||| Sbjct 944179 AAGATCTG 944172 >seq9583 Length=785227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| || | || |||| ||||||||| || || Sbjct 67141 TCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCTTCCAGCTGCTTGCCGGCAAAG 67082 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| || | || ||||| ||| ||||| ||| | | Sbjct 67081 ATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTC 67022 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || ||||| Sbjct 67021 TCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 66962 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 66961 AAGATCTGCAT 66951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322461791298560