Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq14035 165 8e-36 seq26070 116 3e-21 seq30635 102 8e-17 seq2702 100 3e-16 >seq14035 Length=1410301 Score = 165 bits (182), Expect = 8e-36 Identities = 310/450 (69%), Gaps = 17/450 (4%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTT-TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 ||||||| ||| || | ||||||||||| ||||||||||||||||| || || || Sbjct 226471 TTGACATCACTCCTATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTC 226412 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT-----GAACAATAGTATT 16040 ||||| | ||||||||||||||| || ||||| ||||||| | ||| ||| | || Sbjct 226411 CCTTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAA-AATCCTGTT 226353 Query 16041 TATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATAT----ACTGTTTC 16096 | | |||| || | || | || || ||||||||||| | | || || Sbjct 226352 AA----AGCCCAGCTCGAGCATAAGCCTGTCTGCCACAAATTCAGTGTGGCCACCACGTC 226297 Query 16097 ATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt 16156 |||||| |||||||| || || | ||| ||||| | || || | | | | | Sbjct 226296 ATTAAAGTGCAGTTCATCCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGC 226237 Query 16157 tCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGGTTTAA 16215 |||| | || || | || || | || ||||| | || | | | || || || Sbjct 226236 CCTATCCTCACAGCCTTGATAATGGTTTCCTTTACT-CTCTGCTCTGATGGTTTGTGTAC 226178 Query 16216 TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAA 16275 | ||| || ||||| | ||| ||||| ||||| ||||| || || || || || || | Sbjct 226177 CAGGTGCTTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAG 226118 Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 || || |||||||| || || ||||| ||||||| ||| || | ||| ||||| | || Sbjct 226117 TTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGC 226058 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAAC 16365 ||| |||||||||||||| || ||||| || Sbjct 226057 AAAAGAACCAGAAAAGAAGATTCCTTCCAC 226028 >seq26070 Length=15207027 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || |||||||||||||| ||||| ||||||||||| || Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||| | ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 5605466 Query 16379 AC 16380 || Sbjct 5605467 AC 5605468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | |||||||| | |||||||| |||||||| || || || | Sbjct 5603784 TTGACATCACTCCCATCCTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCC 5603843 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||| | ||||||||||||||| || ||||| ||||||| Sbjct 5603844 CTTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 5603882 >seq30635 Length=1530594 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || |||||||| || || || ||||| || |||| ||| | Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||||||||| |||||||| || |||||||| || ||||| || || ||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 16377 CAACCAATC 16385 | |||| || Sbjct 527549 CCACCACTC 527541 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||| || ||||| ||||||||||| |||||||| ||||| |||||| Sbjct 549890 TGATACTCTGAAACTCGTTTCTCAAAAAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 549831 Query 16007 ATAAAATCAAAAGGATT 16023 ||||||||||||||||| Sbjct 549830 ATAAAATCAAAAGGATT 549814 Score = 86.0 bits (94), Expect = 6e-12 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 16059 ACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCT 16117 |||| |||||| || || ||||| || |||||||||||||||||| ||||||||||||| Sbjct 535470 ACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATTAAAACACAGTTCATTCCA 535411 Query 16118 ATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 || | ||| || | |||||||||||||| Sbjct 535410 ATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 535379 >seq2702 Length=368809 Score = 100 bits (110), Expect = 3e-16 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTT-TTGATATTCACTAACTCTCTTTTCAA 15971 ||| ||| || || |||||| ||| ||| | ||||||||||| |||||||| |||| Sbjct 317150 ATTCTCTGTTGGATCTGACATCACTCCCATCCTCTTGATATTCACCTACTCTCTTCTCAA 317209 Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||||| || || ||||| | ||||||||||||||| || ||||| ||||||| Sbjct 317210 AGAAATT-GTCTTCCCTTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 317262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461616021753600