Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq14601 1193 0.0 seq7138 178 9e-40 seq131350 132 3e-26 seq121270 120 2e-22 seq10112 93.3 3e-14 >seq14601 Length=3804423 Score = 1193 bits (1322), Expect = 0.0 Identities = 1126/1426 (79%), Gaps = 30/1426 (2%) Strand=Plus/Plus Query 107226 TTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGAT------------CTCCTCCTC 107273 ||||||||||||| ||||||||||||||||||||||| |||||| || Sbjct 1396071 TTAGTTTGTAATTGGAGGCATTTTGTTCTGTCCAAGGAGTCAACCTTCTTCCTCCTCTTC 1396130 Query 107274 CACCTTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAG 107333 | ||| ||||||| | | || || ||||| |||| |||||||||| | |||| | Sbjct 1396131 CTCCTCTCCTGTGCACCA-CTGGA-TGCTCTCC-ATCCTATGAAGATGGTTTTGTGGGGG 1396187 Query 107334 AAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTT 107393 ||| || ||| || | |||| ||| |||||||||| || |||||||||||| | Sbjct 1396188 AAG---CTCTGCTGGCGCTATCACACCTGGACCCTGGGCTGTTACATGCTGCTGGCCATC 1396244 Query 107394 GTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCC 107453 || | |||||||| |||||||| | || ||||| | ||| |||||||| || Sbjct 1396245 GTGGCCCTGAGACTGTCCCTCAGACTGAAGTGTGACTTTGATGTTCTGGATCTGTCCTCT 1396304 Query 107454 AGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCA 107513 ||||| || ||| ||||||| || | |||||||| | |||||| ||||||||| Sbjct 1396305 AGGGAATT------TCAATACTGTAGAGATTTCTTGTACAAGACCCTGAAACTGCCAGCA 1396358 Query 107514 AAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCC 107573 ||| | ||||| ||||| || ||| | | |||||| |||| ||| |||||| |||| Sbjct 1396359 AAGGGGTCCATAAACTGCTCAGGGGTGGTCCAAGGGGATCAGGGAGCTGTGGTCAAGGCT 1396418 Query 107574 CTCCTAGACAACCTGGA-AGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCT 107632 || || || ||||| || ||| ||||| | ||| || | |||| | | | ||||| Sbjct 1396419 CTGCTTGATAACCTAGAGAGT-AAGAAGACACGGCAGCTTTTCACAGATGCTGACTACCT 1396477 Query 107633 CAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACT 107692 || ||| |||||| |||||| || ||||||| ||||||||||||||||||||| ||| || Sbjct 1396478 CACCATGACCAGACACTGTGGGCTCTTCAAGACCCAAAGGAAGTTCATACAGTACCCGCT 1396537 Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752 ||| ||||||||| |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 1396538 GAGCAAAGAAGAGGCTGACTTCCCCATTGCATACTCCATGGTGGTTCATGAGAAGATCGA 1396597 Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 |||||||||| || | ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1396598 AAACTTTGAAAGGTTACTGCGTGCTGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 1396657 Query 107813 GGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 |||| |||||| |||||| |||||||| |||| |||| |||||| || |||||| | Sbjct 1396658 GGATCAGAAGTCTCCAGAGTCTTTCAAACAGGCTGTCAGTGCCATTGCCTCATGCTTCTC 1396717 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||||||||| ||||| |||||||| | ||||| ||||||||||||||||| ||||| Sbjct 1396718 GAATGTCTTCATAGCCAGCAAGTTGGTTACAGTGGTGTATGCCTCCTGGTCCAGGGTGCA 1396777 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 ||||| |||||||| |||||||||||||| | |||||||||||| ||||| ||| | || Sbjct 1396778 GGCTGATCTGAACTGCATGGAAGACTTGCTACGGAGCTCAGTGCCTTGGAAATACCTCCT 1396837 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052 ||| || || |||||||||||||| || ||||||||||| |||||||||| ||||||||| Sbjct 1396838 GAACACCTGTGGGACAGACTTCCCTATCAAGACCAATGCAGAGATGGTCCAGGCCCTCAA 1396897 Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCG 108112 | | ||||| || |||||||||||||||| |||||||| ||| ||||| | || Sbjct 1396898 GCTATTGAATGGAGAGAACAGTATGGAGTCAGAGGTACCACCTGCACACAAAACACTGCG 1396957 Query 108113 CTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCC 108172 ||||||||||| ||||| |||||||||||| ||||| ||||||| || ||| | || Sbjct 1396958 CTGGAAATACCACTATGTGGTGACAGACACGTTGTACATAACCAGCAGGAAGAAACAGCC 1397017 Query 108173 TCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTT 108232 ||||||| |||| || |||||||||| ||||||||||| | ||||| ||||||| ||| Sbjct 1397018 TCCCCCTAATAACATAACCATGTTCACTGGGAATGCCTACATGGTGGCTTCTCGAGACTT 1397077 Query 108233 TGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292 | | || |||||| ||||||| ||| |||| |||| ||||||||| |||||||| Sbjct 1397078 CATTGAGCACGTCTTAAACAACCCCAAAGCCCAGCAACTGATTGAATGGGCAAAAGACAC 1397137 Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTC 108352 ||||||||| || || ||||| |||||||||||||||||||| | |||||||||||||| Sbjct 1397138 CTATAGCCCTGATGAGCACCTTTGGGCCACCCTTCAGCGTGCCTCATGGATGCCTGGCTC 1397197 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 ||||| |||| ||||||| || |||||||||||| |||| || ||||| ||||| Sbjct 1397198 AGTTCCCTTGCACCGCAAGTATGACCTCTCAGACATGAGATCCATTGCAAGGCTGGTCAA 1397257 Query 108413 GT-GGCAGTACCACGAGGGAGATGTC-AGCATGGGGGCGCCTTATGCACCCTGCTCTGGA 108470 || ||||| ||||||||||||| || || | ||||| |||| | | |||||||| Sbjct 1397258 GTGGGCAG-ACCACGAGGGAGACATCGAGTA-CGGGGCATCTTACAGAACTTGCTCTGGG 1397315 Query 108471 ATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAAC 108530 || || | ||| ||||| ||||| ||| | ||||||||| ||||| | || |||||| Sbjct 1397316 ATTCACCAACGGGGGATCTGTATTTATGGGTCTGGGGACCTGCACTGGTTACTTCAGAAC 1397375 Query 108531 CATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTA 108590 ||||| || || || |||||||||||||| | |||||||||||||||||| ||||||||| Sbjct 1397376 CATCATCTGTTAGCTAACAAGTTTGACCCCAAGGTGGATGATAACGTCCTTCAGTGCTTA 1397435 Query 108591 GAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||||| ||||| || | |||||||||||| |||||| ||| |||| Sbjct 1397436 GAAGAATACCTGCGGTACAAGGCCATCTATAGGACTGGACTGTGAG 1397481 >seq7138 Length=5562 Score = 178 bits (196), Expect = 9e-40 Identities = 580/882 (66%), Gaps = 23/882 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||||||| || ||||| || || || || || ||||| ||| | || Sbjct 1694 CCCCTTAGTGAAGAAGAGGCGGATTTCCCAATCGCATATTCTATAGTGGTTCATCACAAA 1753 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 1754 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 1813 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || |||| |||| || ||||| | || |||| ||||| Sbjct 1814 CATGTGGACAGAAAATCAGAAGAGTCTTTTTTAGCTGCGGTGACGGGCATTGCATCCTGT 1873 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| ||||||| |||||| ||||||||||| || ||| | Sbjct 1874 TTCAATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTGGTTTATGCTTCATGGAGTCGG 1933 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || || || | ||||| | ||||||| Sbjct 1934 GTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTACA-AGATGAGTGCAAACTGGAAGT 1991 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || ||||| || || ||||| || || || | Sbjct 1992 ACTTGATCAATCTTTGTGGTATGGATTTCCCGATCAAAACCAACCTGGAAATCGTGAGGA 2051 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGTCCa 108102 || || |||| | |||| | |||| ||||| ||| || | || || | | Sbjct 2052 AACTTGAGTTGTTCATGGGTGAAAACAACCTGGAGACTGAGAAGATGCCCTCCAA---TA 2108 Query 108103 aaaaaaaTCGCTGGAAA---TACCGCTATGAGGTGACAGACACACTG-TACCCTACCAGC 108158 || || | | |||||| | ||| | | | || |||| ||| || | || | Sbjct 2109 AAGAAGAAAGGTGGAAAAAGTCATGCTGT-TGTTAACGGACA-GCTGATAAAC-ACAGGG 2165 Query 108159 AAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTG 108218 | | || || | || || | || ||| | ||| | || | |||||| |||||| Sbjct 2166 TTGGTCAAAGAGCGGCCTCCACTCAGATTTCCCCTTTTCTCGGGCAGTGCCTACTTTGTG 2225 Query 108219 GCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA-CCCTAAATCCCAAAGACTGGTTGA 108277 ||| | | | | ||| |||| |||| || | |||| ||| | | || Sbjct 2226 GCCAGTAGGGAATATGTGGGCTATGTGCTAGAGAATGAAGACATCCAGAAG-TTCATGGA 2284 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337 |||| | ||||||| || |||||||| || |||||||||||||| | || | | ||| Sbjct 2285 GTGGGCCCAAGACACATACAGCCCCGATGAGTACCTCTGGGCCACCATCCAAAG-GATCC 2343 Query 108338 GTGGA-TGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 | | | |||||||| | |||| ||| |||||| || | || ||||||| ||| Sbjct 2344 CCGAAGTCCCTGGCTCACTCTCCT-CAAACCATAAGTATGACTTGTCTGACATGAATGCT 2402 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 |||| ||| | ||||||||||||||| ||| || ||||| || ||| ||||| || Sbjct 2403 GTCGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGTGATGTTTCCAAGGGCGCGCCCTAC 2462 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | |||||| ||| | || | | | | ||| ||| ||||| || ||| || | Sbjct 2463 CCGCCCTGCAGTGGGGTGCACGTGCGCTCTGTGTGCGTTTTCGGGGTTGGCGACTTGAAA 2522 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| || | || || ||| | || || || ||||||||| Sbjct 2523 TGGATGCTGCGTAAGCACCACTTTTTTGCCAATAAGTTTGAC 2564 >seq131350 Length=683 Score = 132 bits (146), Expect = 3e-26 Identities = 272/401 (68%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||||||| || ||||| || || || || || ||||| ||| | || Sbjct 435 CCCCTTAGTGAAGAAGAGGCGGATTTCCCAATCGCATATTCTATAGTGGTTCATCACAAA 376 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 375 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 316 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || |||| |||| || ||||| | || |||| ||||| Sbjct 315 CATGTGGACAGAAAATCAGAAGAGTCTTTTTTAGCTGCGGTGACGGGCATTGCATCCTGT 256 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| ||||||| |||||| ||||||||||| || ||| | Sbjct 255 TTCAATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTGGTTTATGCTTCATGGAGTCGG 196 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || || || | ||||| | ||||||| Sbjct 195 GTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTACA-AGATGAGTGCAAACTGGAAGT 138 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || ||||| || || ||||| || || || | Sbjct 137 ACTTGATCAATCTTTGTGGTATGGATTTCCCGATCAAAACCAACCTGGAAATCGTGAGGA 78 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 || || |||| | |||| | |||| ||||| ||||| Sbjct 77 AACTTGAGTTGTTCATGGGTGAAAACAACCTGGAGACTGAG 37 >seq121270 Length=520 Score = 120 bits (132), Expect = 2e-22 Identities = 200/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| | ||||||| || |||||||| || |||||||||||||| | || | | | Sbjct 157 GAGTGGGCCCAAGACACATACAGCCCCGATGAGTACCTCTGGGCCACCATCCAAAG-GAT 215 Query 108336 CCGTGGA-TGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 || | | | |||||||| | |||| ||| |||||| || | || ||||||| || Sbjct 216 CCCCGAAGTCCCTGGCTCACTCTCCTCAA-ACCATAAGTATGACTTGTCTGACATGAATG 274 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 | |||| ||| | ||||||||||||||| ||| || ||||| || ||| ||||| | Sbjct 275 CTGTCGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGTGATGTTTCCAAGGGCGCGCCCT 334 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | | |||||| ||| | || | | | | ||| ||| ||||| || ||| || Sbjct 335 ACCCGCCCTGCAGTGGGGTGCACGTGCGCTCTGTGTGCGTTTTCGGGGTTGGCGACTTGA 394 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||| || | || || ||| | || || || ||||||||| Sbjct 395 AATGGATGCTGCGTAAGCACCACTTTTTTGCCAATAAGTTTGAC 438 >seq10112 Length=11852372 Score = 93.3 bits (102), Expect = 3e-14 Identities = 173/249 (69%), Gaps = 14/249 (6%) Strand=Plus/Minus Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 |||||||| | |||||||| || ||||||| ||| | ||| | || |||||||| || Sbjct 3482439 CCTCAGAATGTCTACTGTGTGCATGTGGATGAAAAGGCACCAAACACCTTCAAAGATGCC 3482380 Query 107847 GT-CAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGG 107904 || ||| | ||| | ||||||| |||||| ||| |||| |||| ||| | | Sbjct 3482379 GTGCAA--CAGTTACTGAGCTGCTTCTCCAATGCCTTTCTGGCTTCTAAGATGGAGTCAG 3482322 Query 107905 TGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG---- 107960 |||| || | || ||| | | || |||||||||||||| ||| |||| || Sbjct 3482321 TGGTCTACGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATGAAAGATCTGGTGG 3482262 Query 107961 -CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCAT 108019 ||||| || || || ||||||||| | ||||| || ||| |||||||||| | Sbjct 3482261 CCTCCA-AG----GTCCCCTGGAAGTACGCCATCAATACCTGTGGGCAAGACTTCCCCCT 3482207 Query 108020 AAAGACCAA 108028 || ||||| Sbjct 3482206 GAAAACCAA 3482198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347611000338624