Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq15815 201 9e-47 >seq15815 Length=3425397 Score = 201 bits (222), Expect = 9e-47 Identities = 493/742 (66%), Gaps = 9/742 (1%) Strand=Plus/Minus Query 20034 GAGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 |||| |||||||||| | | || | ||||| ||||| ||||| || ||| | || || Sbjct 2367018 GAGAGATGAATTTCCTCTGCTCACAGCCAAACGAGTATTCTGGAAGGGTGTTTTGGAGGA 2366959 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAA 20153 ||| ||||||||||||| ||||| |||||| ||| || || | || | || Sbjct 2366958 GTTGCTATGGTTTATTAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAGGGGGGAGAA 2366899 Query 20154 GATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCA-ATGGATTTGACAACCGTC 20212 || ||| || ||||||| | | ||| | ||||| | ||||| || || | Sbjct 2366898 AATCTGGGATGCCAATGGATCCCGGGACTTTCTGGACAGCCTAGGGATTCTCCACTCGGC 2366839 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 | | ||||| || |||| || ||||| || || |||| ||||||||||| || || Sbjct 2366838 AGAAAGGGGACCTGAGTCCAGTTTATGGTTTCCAGTGGATGCATTTTGGAGCAGACTACA 2366779 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || ||| | | |||| | || ||||||| ||| | | || || |||||| || Sbjct 2366778 AAGATATGGATTCTGATTACTCAGGTCAAGGAGCAGACAAGCTGCAGAAAGTTATTGATA 2366719 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 || ||||| ||| | ||||||||||| | | || ||||||||| | |||||| Sbjct 2366718 CCATCAAAACCAAC---ACTGACAGAAGAATCA---TGTGTGCCTGGAACCCAAAAGATC 2366665 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | ||||| || || | ||||| | || ||| | || || || | ||| | Sbjct 2366664 TTCCTCTGATGGCGCTGGCTTCTTGTCAAGTCCTCTGCTAGTTCTATGTGGTGAATGGGG 2366605 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 | |||| || ||| | || || | || | | || ||| |||||||| || ||||| | Sbjct 2366604 AGCTGTCCTGCCAACTTTACCAGAGGTCAGGAGGTACGGGCCTGGGTGTGCCCTTCAACA 2366545 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 | || || |||| | ||| | || ||||| ||||| | ||||| | || | |||| Sbjct 2366544 TCGCCAGCTATG-TCCGCTAAGCTACATGATCGCACACATCACAGACCTGAAGTCAGGTG 2366486 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAAT 20632 | || || | | | ||||| || || ||||||| ||||| || || || | ||| Sbjct 2366485 ATTTTGTAC-TATTTTGGGAGATGCATATGTTTACCTGAATCACATTGAGCCACTGAAAA 2366427 Query 20633 TACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAG 20692 | ||| | ||| |||||| || || |||| || | || | ||| || | Sbjct 2366426 TTCAGCTCCAGCGAGAACCAAGACCTTTTCCAAAGCTCGGAATCTTTTGAAACATTCAGA 2366367 Query 20693 ATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAA 20752 | || | || || |||| ||| || ||| | | ||||| |||||||| ||| | | Sbjct 2366366 CTGTTGATGACTTCAAAGTTGAAGACTTTCAGATTGAAGGATATAATCCACATCCAACTA 2366307 Query 20753 TTCCAATGGAAATGTCTGTTTA 20774 || ||||||||| ||||||| Sbjct 2366306 TTAAAATGGAAATAGCTGTTTA 2366285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398430033236320