Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq16386 129 5e-25 seq23020 127 2e-24 seq17823 114 1e-20 seq9583 114 1e-20 seq33511 105 5e-18 seq61872 93.3 3e-14 >seq16386 Length=4700455 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 632464 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 632405 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| | ||| |||||||| | | ||||| |||||| Sbjct 632404 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 632345 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 632344 ATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 632285 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 632284 CCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | |||| ||| ||||||||| ||| |||||||| ||| ||| |||| ||| Sbjct 631324 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631265 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| |||||||| | | ||||| |||||| Sbjct 631264 AGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631205 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 631204 ATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631145 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 631144 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631116 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | |||| ||| ||||||||| ||| |||||||| ||| ||| |||| ||| Sbjct 631552 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631493 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| | ||| |||||||| | | ||||| |||||| Sbjct 631492 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631433 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||||||||||| ||| || |||||| Sbjct 631432 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631373 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 631372 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | |||| ||| ||||||||| ||| |||||||| ||| ||| |||| ||| Sbjct 631780 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631721 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| | ||| |||||||| | | ||||| |||||| Sbjct 631720 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631661 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||||||||||| ||| || |||||| Sbjct 631660 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631601 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 631600 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | |||| ||| ||||||||| ||| |||||||| ||| ||| |||| ||| Sbjct 632008 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631949 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| | ||| |||||||| | | ||||| |||||| Sbjct 631948 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631889 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||||||||||| ||| || |||||| Sbjct 631888 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631829 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 631828 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| | |||| ||| ||||||||| ||| |||||||| ||| ||| |||| ||| Sbjct 632236 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 632177 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| | ||| |||||||| | | ||||| |||||| Sbjct 632176 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 632117 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||||||||||| ||| || |||||| Sbjct 632116 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 632057 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 632056 CCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq23020 Length=748909 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||||||||| ||| ||| | || || || || Sbjct 60949 GTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTG 60890 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || |||| || ||| ||||| || || | |||||||||||| || || Sbjct 60889 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTT 60830 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||||| ||| || |||||||| || Sbjct 60829 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 60770 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 60769 CAGGGTCTTCACGAAGATCTGCATTTTG 60742 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| |||||||| || || ||| | || ||||| || Sbjct 61177 GTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTG 61118 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| || ||| ||||| || || | |||||||||||| || || Sbjct 61117 CTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTT 61058 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||||| ||| || |||||||| || Sbjct 61057 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 60998 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||| ||||| |||||| Sbjct 60997 CAGGGTCTTCACGAAGATCTGCATG 60973 >seq17823 Length=3576200 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||||||||| ||| || | | || ||||| || Sbjct 944372 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTG 944313 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || | ||| |||| || ||| ||||| || || | || ||||||||| || || Sbjct 944312 CTTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATT 944253 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||||| ||| || |||||||| || Sbjct 944252 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 944193 Query 45313 CAGAGTCTTCACAAAGATTTG 45333 ||| |||||||||||||| || Sbjct 944192 CAGGGTCTTCACAAAGATCTG 944172 >seq9583 Length=785227 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| ||||||||||| ||| | | | || ||||| || Sbjct 67154 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCTTCCAGCTG 67095 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || ||| ||||| || || | ||||||| |||| || || Sbjct 67094 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTT 67035 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | |||||| |||| ||| || |||||||| || Sbjct 67034 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGT 66975 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 66974 CAGGGTCTTCACGAAGATCTGCATTTTG 66947 >seq33511 Length=8354299 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||| ||| ||| ||||| |||||||||||| || | || || ||| Sbjct 8199644 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCCTCC 8199585 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||| || |||| |||||| ||||| ||| | | || ||||||||| Sbjct 8199584 AGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTCCTAG 8199525 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | ||||||||| | || || |||||| Sbjct 8199524 ATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTCTTG 8199465 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| |||||||||||||| ||| | ||| Sbjct 8199464 CCAGTCAGGGTCTTCACAAAGATCTGCGTCTTG 8199432 >seq61872 Length=227 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 59 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 118 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 119 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 178 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGG 45296 || ||| ||| || | | | | |||| | ||||||||||| || Sbjct 179 ATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394328993814496