Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq14035 178 1e-39 seq26070 123 2e-23 seq30635 120 3e-22 seq2702 91.5 1e-13 >seq14035 Length=1410301 Score = 178 bits (196), Expect = 1e-39 Identities = 480/728 (66%), Gaps = 25/728 (3%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 226451 TTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTC 226392 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| || |||||||||||| | | || | | | | | || || || | | | Sbjct 226391 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCAGCTCGAGCATAAG 226332 Query 14035 TCTATCCGCAATGAACTCAATATATTGA----GACATTAAATCACAATTCATACCTATTA 14090 || || || | || ||| | | | | ||||||| || ||||| || || | Sbjct 226331 CCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAATGA 226272 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 |||| ||||| | | | | | || | |||| |||||||| | | || Sbjct 226271 GTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTTGATAATGG 226212 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | | | | | | | || || | | || || || || || | ||| |||| Sbjct 226211 TTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGGCAA 226152 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 | ||||| || | ||||||||||| || |||||||| || |||||||| | || |||| Sbjct 226151 AGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGGGCA 226092 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 ||| ||||| ||| || | ||| ||||||| || || || || |||||||| ||||| | Sbjct 226091 TCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTT 226032 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 | || ||||| ||| | ||||||||| | | || || |||| | | | || Sbjct 226031 CCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGC-TTCTTGTCCCA-ACGCA-- 225977 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 ||||| |||| || || | | || ||| |||||||| ||||||| | | Sbjct 225976 ---AGGCCCAGTCAG---CCTTCTTCACACAAGGCATCGTTTCAATGACATTAAAGAGAA 225923 Query 14451 GTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509 |||| | ||||| | | ||| | |||| |||||||| | || ||| |||| || Sbjct 225922 ATTCCCTTTCTTTGGAATCTTTA-----ATGTGTCAATAAGAAGACTGTACGTTTCGGAA 225868 Query 14510 TGTAT----GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 |||| |||||||| || | || | ||||| ||||| | ||||| | || Sbjct 225867 CGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAATTTA 225808 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | ||| | |||| || |||| |||||||| ||||| |||||||| |||||||| Sbjct 225807 AAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGCAAA 225748 Query 14626 AAATGCCA 14633 || |||| Sbjct 225747 GAAAGCCA 225740 >seq26070 Length=15207027 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| ||||| || || |||||||| | || ||||||| ||||||||| | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 5605465 CTACAACACGTTCTCC 5605480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | |||||||| | ||||| || ||||||||||| || || ||| Sbjct 5603786 GACATCACTCCCATCCTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCT 5603845 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||||||||| || |||||||||||| Sbjct 5603846 TCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 5603881 >seq30635 Length=1530594 Score = 120 bits (132), Expect = 3e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| || || ||||| |||||||| || | ||| ||||| | |||| ||| ||| Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| ||||| ||||||||||||||||| ||||| || || |||||||| || Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGC 527549 >seq2702 Length=368809 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTT-TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACC 13956 || || || ||||| | ||||||||||| ||||| || |||||||| || || || || Sbjct 317166 GACATCACTCCCATCCTCTTGATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCC 317224 Query 13957 TTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 ||||||||| ||||||||||| || |||||||||||| Sbjct 317225 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 317261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481411200103680