Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq29155 107 2e-18 seq19862 84.2 2e-11 >seq29155 Length=1778819 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || || || || || || || Sbjct 1086506 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTT 1086447 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || || || ||||| |||||||||||||| || || Sbjct 1086446 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTA 1086387 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||||||||| || Sbjct 1086386 CCAGTCTCTGTCTGAGACTCGATGATGGC 1086358 >seq19862 Length=8011266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/219 (69%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| || ||||| || || | ||| || | |||||||| || Sbjct 7074722 ATGCAGATTTTCGTAAAGACCCTTACAGGGAAGACCACCACGCTCAAGGTTGAACCCTCG 7074663 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | ||| | ||| || ||| ||||||| | | || || ||| Sbjct 7074662 GACACTAT--AAAAAGCCAA------GATCTAGGATAAGGAAGAAATTTCTCCTGATCAG 7074611 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| | ||||| || || | ||| ||| || || || || Sbjct 7074610 CAAAGGCTGATCTTTGCTGGTGAGCAGTTAGAGGA-TGAATGAACTTTGTCTGACTAAAA 7074552 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || || |||||||| || || ||||| Sbjct 7074551 CATTCAAAAGGAGTCCACCCTTCATCTTGTGCTGAGACT 7074513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444902861329920