Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14035 196 4e-45 seq32167 134 1e-26 seq26070 134 1e-26 seq30635 132 5e-26 seq29155 104 2e-17 >seq14035 Length=1410301 Score = 196 bits (216), Expect = 4e-45 Identities = 505/758 (67%), Gaps = 31/758 (4%) Strand=Plus/Minus Query 11329 CACCCCCATCTT-TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTA 11387 ||| || ||| | ||||||||||| |||| ||| || || || ||||| ||||| | Sbjct 226464 CACTCCTATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCA 226405 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| ||||| ||| ||| ||||| | ||| |||| | | | | | || | Sbjct 226404 GTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCA 226345 Query 11448 ACTCTGTTAATAATC-TATCTGCGACGAATTCTATAT----ACTGAGACATTAAACAACA 11502 ||| | |||| | | ||||| || ||||| | | || | ||||||| || Sbjct 226344 GCTC-GAGCATAAGCCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCA 226286 Query 11503 ATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAAC 11562 ||||| || || || | ||| || | ||| | | | | ||||| |||| | || Sbjct 226285 GTTCATCCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCAC 226226 Query 11563 CGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAA 11622 || | || || | | ||| | || |||||| |||| | || || || Sbjct 226225 AGCCTTGATAATGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAA 226166 Query 11623 CATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA 11682 ||| | ||| ||||| ||||| || ||||| || ||||| || || |||||||| ||||| Sbjct 226165 CATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAA 226106 Query 11683 TGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGA 11742 ||| | |||||||||| ||||| ||| || | ||| ||||| | ||||| |||||||| Sbjct 226105 TGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGA 226046 Query 11743 AAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTG 11800 |||||| ||||| |||||| |||||| ||| | || | |||||||||| | ||| ||| Sbjct 226045 AAAGAAGATTCCTTCCACA-ATGCAAAAGCTGCAACACGTTCTCCATATGCAGCTTCTTG 225987 Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 ||| |||||| ||||| ||| || || || ||| ||||| || Sbjct 225986 ------TCCCAACGCAAGGCCCAGTCAGC---CTTCTTCACACAAGGCATCGTTTCAATG 225936 Query 11861 GCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | |||| | |||| | ||||| | |||| ||| |||| || || | | || Sbjct 225935 ACATTAAAGAGAAATTC--CCTTTCTTTGGAATCT-TTA---ATGTGTCAATAAGAAGAC 225882 Query 11919 TATACATTTCTGAATGAATA----TTTTCCATAGCTATTTGAAATCCATAGAAACATCGT 11974 | ||| |||| ||| | ||| ||||||| || | ||| | ||||||||||| || Sbjct 225881 TGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGG 225822 Query 11975 GCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCA 12034 || || | | | | || |||| ||| | || || |||||||| || ||| Sbjct 225821 GCTTCCGTAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCA 225762 Query 12035 TCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 ||||| | |||||| || || || | ||| |||||| Sbjct 225761 TCACTCGCTGCAAAGAAAGCCAGAACATGGGATATAAA 225724 >seq32167 Length=1788516 Score = 134 bits (148), Expect = 1e-26 Identities = 320/478 (67%), Gaps = 13/478 (3%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 || ||||| | ||| | | ||||| | |||||||| ||||| |||| ||| || Sbjct 592574 ATTGGATTAGCTGCAGGTCTTGTTGT----TAATACATCCCAGTCTTTAAACCCTGCTTC 592629 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || || ||||| ||||||||| | ||||| | || |||| | | ||| || || Sbjct 592630 CAGCCATAAAAGTGCATACTGATGAGTTTGCCATAGTTAGGCTCAGTGATACGGATGTTC 592689 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | || || |||||||| || || |||||||| | | | |||||| | | | ||| Sbjct 592690 AGAGACTGGCTTTGATCAATGAAAGCACCTCTCTTGAATACCATTTTGAGGACAGTTTTC 592749 Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA-ATG 37043 ||||| || ||| | || || ||||| | || || | | ||| || | ||| | ||| Sbjct 592750 TGAGAGATTTCCTACACAGTCTTATAAAGCTGATTCAGGTCATCAGGAATTTCTGATATG 592809 Query 37044 TT--GAATAGAACCATT--ATGTAACACAATTGTATTCT-TTATGTCATTATTCCACATA 37098 || | ||| | ||||| ||| || || | | || | || | | ||| | | | Sbjct 592810 TTCTGGATAAATCCATTGCATGCAATACTCTGGGTTTTTGTTTTTTTTTTAAATCTCTTC 592869 Query 37099 TTTCTACTT---ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGAT 37155 ||| | | | || ||| ||| || ||| |||| ||||| |||||| ||||| | Sbjct 592870 ATTCAAGATTCCAATAAATCTTTCAGTAAGTGAGGATATACAATCTGAAATTCTCCTAAC 592929 Query 37156 AATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 || ||||||| || | || ||||| ||||| ||||||| ||||||||||| | | Sbjct 592930 AAAACTCTTCAAGTGTGGATGTTGCTGGTATAACGTTCAATAGACTCATTATTCCCCAGA 592989 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || |||| || || ||||||||||| | || || || | || ||||| | |||| Sbjct 592990 ATCTGAGCAGTTGAAGCAGTAGGCATCAGGGCAATAAGTAAACTGTTTCTTATACCAT 593047 >seq26070 Length=15207027 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||| |||||||| | || ||||||| ||||||||| || Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||| Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 5605466 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 5605467 ACAACACGTTCTCC 5605480 >seq30635 Length=1530594 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||||||||||||||||||||| || |||||||| ||||| || ||||| ||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 527549 CCACCACTCTTTCCCC 527534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| |||||| ||||| ||||| |||| ||| || || Sbjct 517977 ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 517918 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 517917 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 517872 >seq29155 Length=1778819 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || ||||||||||||||||| ||||| | || |||| | | | |||| || Sbjct 1094720 TCCAGCCATAAAAATGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1094661 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 | | || || |||||||| || || |||||||| ||||||||||||| | || | || Sbjct 1094660 TTAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATTTTGAGAACAGTTT 1094601 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || || ||||| | ||| || Sbjct 1094600 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 1094564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || || || ||||||||| Sbjct 1091680 ACCTGAAATTCTCCCGACAAAACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 1091621 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | || || |||| || || |||||||||||||| || || || | Sbjct 1091620 GACTCATTATTCCCTAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 1091561 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1091560 CTGTTTCTTATACCAT 1091545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467617173757440