Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq15815 174 1e-38 seq5010 143 2e-29 seq10112 91.5 1e-13 seq28954 87.8 2e-12 >seq15815 Length=3425397 Score = 174 bits (192), Expect = 1e-38 Identities = 445/671 (66%), Gaps = 11/671 (2%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || |||| ||| || |||||| | || || ||||| | | Sbjct 2366420 AGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAAACATATGCATCTCCCAAAATA-GT 2366478 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 ||||| || || | ||||| | |||| ||| ||||||| || | || || | ||| Sbjct 2366479 ACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCGATCATGTAGCTTAGC-GGACATAG 2366537 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || || || |||||| | | | ||||||||||| || |||||| Sbjct 2366538 CTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCTCCTGACCTCTGGTAAAGTTGGCAG 2366597 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||||||| |||| || |||| || | || ||||||| || || |||||| Sbjct 2366598 GACAGCTCCCCATTCACCACATAGAACTAGCAGAGGACTTGACAAGAAGCCAGCGCCATC 2366657 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGGGCCGCCT 21211 | | || || |||||||| || ||||| ||| | | || ||| | | Sbjct 2366658 AGAGGAAGATCTTTTGGGTTCCAGGCACACAT---GATTCTTCTGTCAGTGTTG----GT 2366710 Query 21212 GTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTC 21271 || || ||| | || | |||||| ||| | || ||||| ||| | | || Sbjct 2366711 TTTGATGGTATCAATAACTTTCTGCAGCTTGTCTGCTCCTTGACCTGAGTAATCAGAATC 2366770 Query 21272 GGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | |||| || || |||||||| |||||||||| || || || || | ||| || Sbjct 2366771 CATATCTTTGTAGTCTGCTCCAAAATGCATCCACTGGAAACCATAAACTGGACTCAGGTC 2366830 Query 21332 GCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGT 21390 || | | || ||| |||| || | ||| |||| | ||||| || | || | Sbjct 2366831 CCCTTTCTGCCGAGTGGAGAATCCCTAGGCTGTCCAGAAAGTCCCGGGATCCATTGGCAT 2366890 Query 21391 CCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 |||| ||||| | || | | |||||||| | | | ||||| ||| | ||||||| Sbjct 2366891 CCCAGATTTTCTCCCCCCTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTAATAAACC 2366950 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACT 21510 | ||||||||||||| || ||| |||| || || | ||||| || | ||||||||| | Sbjct 2366951 ATAGCAACTCCTCCAAAACACCCTTCCAGAATACTCGTTTGGCTGTGAGCAGAGGAAATT 2367010 Query 21511 CGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCC 21570 | || || || | || | ||||| | | || ||| || || || ||| || | Sbjct 2367011 CATCTCTCGGGCTGTAGCACGCCTGCATGCGGAGCACCAACAGGGCGCTGGTGCCAGTGC 2367070 Query 21571 TGTCCTCCCTC 21581 ||||||| || Sbjct 2367071 GGTCCTCCTTC 2367081 >seq5010 Length=4126613 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || ||||| |||||||||||||| || | Sbjct 1433162 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 1433221 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || |||||||| || | ||||||||||| |||||||||||||||||||| Sbjct 1433222 GCACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCA 1433281 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || |||||||| || |||||| Sbjct 1433282 CCACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATC 1433325 >seq10112 Length=11852372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 |||||| | || || ||||| || || || || || || | ||||||| |||| ||| Sbjct 4836272 GTAAACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTGTGATGTG 4836331 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || |||| || || || |||| |||||| |||||| || || || || |||||||| Sbjct 4836332 TGCTATCATGTAGGTGAGTGGGGCATAGCTGCAGATGTTGAAGGGCACACCCAGGCCCAT 4836391 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAG 21092 || | | || |||||||||||||||| Sbjct 4836392 ATCTCCTGCCCCCTGGTACAGCTGGCAG 4836419 >seq28954 Length=7234374 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 3022 TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 |||||| || | || |||||||||||||| | | || || ||||| ||||| ||||| Sbjct 4915289 TTCTCTACTGAGAACAATATTAATTCTGTCCTTTAATGGTCGATTCTTCTCAGGAATGGA 4915230 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACA 3127 |||||| ||| | | |||||||| |||| ||||| || ||||||| Sbjct 4915229 AAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCTACA 4915184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426968029524480