Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23020 98.7 1e-15 seq16386 95.1 1e-14 >seq23020 Length=748909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||||| |||||||| || Sbjct 60942 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGTTTGCCG 60883 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 60882 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 60823 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 60822 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60763 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 60762 TTCACGAAGATCTGCAT 60746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 61204 ATAGCCACCCCGGAGACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATC 61145 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | |||| ||||| ||||| || || || ||||||| | ||||| || || Sbjct 61144 AGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGG 61085 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| || || | | || | |||||| ||||||| Sbjct 61084 TGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTC 61025 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 61024 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 >seq16386 Length=4700455 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||| | || ||| || |||| |||||| || || || || Sbjct 631312 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631253 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 631252 GCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631193 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| |||| || Sbjct 631192 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631133 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 631132 TTCACGAAGATCTGCAT 631116 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| || || || || Sbjct 632452 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 632393 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 632392 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 632333 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| |||| || Sbjct 632332 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 632273 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 632272 TTCACGAAGATCTGCAT 632256 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||| | || ||| || |||| |||||| || || || || Sbjct 631540 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631481 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 631480 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631421 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || ||||||||||||| | ||| | |||||||| |||| || Sbjct 631420 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631361 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 631360 TTCACGAAGATCTGCAT 631344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||| | || ||| || |||| |||||| || || || || Sbjct 631768 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631709 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 631708 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631649 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || ||||||||||||| | ||| | |||||||| |||| || Sbjct 631648 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631589 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 631588 TTCACGAAGATCTGCAT 631572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||| | || ||| || |||| |||||| || || || || Sbjct 631996 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631937 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 631936 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631877 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || ||||||||||||| | ||| | |||||||| |||| || Sbjct 631876 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631817 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 631816 TTCACGAAGATCTGCAT 631800 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||| | || ||| || |||| |||||| || || || || Sbjct 632224 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 632165 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||| || Sbjct 632164 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 632105 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || ||||||||||||| | ||| | |||||||| |||| || Sbjct 632104 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 632045 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 632044 TTCACGAAGATCTGCAT 632028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495103024819200