Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14035 264 2e-65 seq13819 190 3e-43 seq32167 134 2e-26 seq26070 120 4e-22 seq29155 118 2e-21 seq30635 116 5e-21 seq2702 109 8e-19 >seq14035 Length=1410301 Score = 264 bits (292), Expect = 2e-65 Identities = 528/768 (69%), Gaps = 37/768 (5%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTT-TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 ||||| ||||| || | ||| |||||||| || | ||||| || || || || || || Sbjct 226469 GACATCACTCCTATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCC 226410 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 ||||| ||| |||||||||||||| ||||| ||||| || | |||| | ||||| Sbjct 226409 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAA 226350 Query 49773 TCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCA--TCATTTCA 49830 |||| || || | || || || |||||||| | | | || ||||| | Sbjct 226349 GCCCAGCTCGAGCATAAGCCTGTCTGCCACAAATTCAGTGTG-GCCACCACGTCATTAAA 226291 Query 49831 ---CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATG 49887 || ||||| || || ||||| || || | |||| | | || | || || | || Sbjct 226290 GTGCAGTTCATCCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATC 226231 Query 49888 GATACCGCATCTGTTATAATAGATC---TAACGGTTTCTTCACTC--GGTGGATGCAATA 49942 || || | | ||||| | | | || | ||| | || ||| || | | Sbjct 226230 CTCACAGCCT---TGATAATGGTTTCCTTTAC--TCTCTGCTCTGATGGTTTGTGTACCA 226176 Query 49943 AATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 50002 || || ||||||| ||| || || || ||||||| |||||| ||||| || || |||| Sbjct 226175 GGTGCTTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTT 226116 Query 50003 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAA 50062 | |||||||| ||||| |||||||| || || | || || ||||| ||||| || |||| Sbjct 226115 CATTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAA 226056 Query 50063 ATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAG--GCAACAAGTCTCTCTCCATA 50120 | || |||||||||||||||||||| || | |||| |||||| || |||||||| Sbjct 226055 AAGAACCAGAAAAGAAGATTCCTTCCACAATGCAAAAGCTGCAACACGT---TCTCCATA 225999 Query 50121 ACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 || ||| || ||| | || | ||||| || |||||| || ||||||||||| Sbjct 225998 --TGCAGCT-TCTTGTCCCAACGCAAG-GCCCAGTCAGCCTTC---TTCACACAAGGCAT 225946 Query 50181 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 |||||| ||| ||||||||||| | | |||| || ||||||| | || || || Sbjct 225945 CGTTTCAATGACATTAAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATGTGTCAAT 225890 Query 50241 CAAAAGACTATACATTTC----CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 50296 | |||||| ||| |||| || || || |||||| | ||| | || | || |||| Sbjct 225889 AAGAAGACTGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGA 225830 Query 50297 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCA 50356 |||| | || || ||||| | | |||| | |||| || | || |||||||| | Sbjct 225829 AACAGCGGGCTTCCGTAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTA 225770 Query 50357 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 50404 |||| || ||||| |||||||| || |||| ||||| |||||||| Sbjct 225769 CTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGGGATATAAAAT 225722 >seq13819 Length=2138633 Score = 190 bits (210), Expect = 3e-43 Identities = 394/579 (68%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| ||| || || || |||||| |||||| ||||| ||| || || Sbjct 1575464 TGCTTGAACATCAGACAGGCAAAGTCATAGTGCAAACCCTCATCTCTG-TAAAAAGCTCA 1575406 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 | ||||||||| || | |||||| || || | |||| | || |||| || |||| Sbjct 1575405 TCGGAAAACGTAAGACTGGGCATCAGTCCTCAGGTTTTGAATCAGAATAATTACACAAAA 1575346 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 | ||||| |||||||||||||| | | | ||||||| |||| | | || | | || Sbjct 1575345 TAACCAGAGAAGAAGATTCCTTCCTCAGTGACAAAGGCTACAA-TGTAGCTTCTT---TG 1575290 Query 50125 -GCGCTGTCATGTATCCACTTTTGAGCCCAA-TCGGCCTTCTTTTTTACACAAGGCATCG 50182 | | ||| | ||| || |||| || ||||||| || | | |||||| Sbjct 1575289 TCCCCAGTCCAG--CCCA------AGACCAAGTCTCCCTTCTTCTTCATAGGAGGCATTC 1575238 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 |||| ||| |||| || ||| | | ||||| | ||||||| ||||| || | | Sbjct 1575237 TTTCAATGCCATTGAAAAGAAATTCCTTTTCTCTGGAATCTTTAGGGTAAGTGTCAACAA 1575178 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 ||||| |||||||| ||||| |||||||| |||| || || || || |||||||| | Sbjct 1575177 GAAGACAGTACATTTCAGAATGTATGTTTTCCGTGGCAATTTGGAAGCCATAGAAACAGC 1575118 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTC 50362 || | ||||| || |||||| | ||||| || ||| |||||||| ||| | Sbjct 1575117 GGGCTTATGTAATTTGAACTTCTTGGCTGAATCGCTCCACTACGTTTTCATTTACTGTGT 1575058 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 ||| || ||| |||| | |||| ||| || ||||| | | || | |||| | | Sbjct 1575057 GGTCGCTCGCTTCAAAGGAAGCCA--GAATGAGATACAAAATATCTCTCTTCGGGTTTCA 1575000 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | | ||| | | ||| || || || | |||||| || || ||||||||| | Sbjct 1574999 GGGCTTCCCAGTGCTGGATGTCCTTGGAGAGATCTACCTCCTCAGCTGTCCAAACGGGGT 1574940 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 50521 ||| || || || ||||| |||||||| |||||||||| Sbjct 1574939 CCTTAGCTTTCTTGTACATCTTCCAGATATCATGATATT 1574901 >seq32167 Length=1788516 Score = 134 bits (148), Expect = 2e-26 Identities = 305/457 (67%), Gaps = 25/457 (5%) Strand=Plus/Plus Query 78757 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTG 78816 || ||||| || || |||| ||| | |||| || || || |||||||| | |||||| Sbjct 592600 TAATACATCCCAGTCTTTAAACCCTGCTTCCAGCCATAAAAGTGCATACTGATGAGTTTG 592659 Query 78817 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 78876 ||| | || || | ||| |||| |||| ||| || |||||||| ||||| || || Sbjct 592660 CCATAGTTAGGCTCAGTGATACGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 592719 Query 78877 CTGTCTGCAG-CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 78935 || | || | ||||||| | || || || || | |||||| | | ||| ||||||| Sbjct 592720 CTCT-TGAATACCATTTTGAGGACAGTTTTCTGAGAGATTTCCTACACAGTCTTATAAAG 592778 Query 78936 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 78992 | || | || || |||| | || | ||||| || ||||| ||| ||| | Sbjct 592779 CTGATTCAGGTCATCAGGAATTTCTGATATGTTCTGGATAAATCCATTGCATGCAATACT 592838 Query 78993 CCTA-TTCTTG------------ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 79039 | || ||| |||||||||||| | | | | |||| || Sbjct 592839 CTGGGTTTTTGTTTTTTTTTTAAATCTCTTCATTCAAGATT-------CCAATAAATCTT 592891 Query 79040 TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATAT 79099 | || | || |||| || | ||||||||||| |||| ||||| | ||||| || | Sbjct 592892 TCAGTAAGTGAGGATATACAATCTGAAATTCTCCTAACAAAACTCTTCAAGTGTGGATGT 592951 Query 79100 TACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTG 79159 | |||||||| |||| | || |||||||| |||| ||| ||||||||||| || || | Sbjct 592952 TGCTGGTATAACGTTCAATAGACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAG 593011 Query 79160 GCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA 79196 |||| | || | | |||||| ||||| | ||| || Sbjct 593012 GCATCAGGGCAATAAGTAAACTGTTTCTTATACCATA 593048 >seq26070 Length=15207027 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || |||||||| || || || ||||| || || || || | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 50102 CAACAA 50107 | |||| Sbjct 5605465 CTACAA 5605470 >seq29155 Length=1778819 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 1091681 TACCTGAAATTCTCCCGACAAAACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAAT 1091622 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || |||||||| || | ||| ||||||||||| || || ||||| || || | | ||| Sbjct 1091621 GGACTCATTATTCCCTAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAA 1091562 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| ||||| | ||| || Sbjct 1091561 ACTGTTTCTTATACCATA 1091544 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || || ||||||||||| || |||||| ||| | || || || |||||||| | Sbjct 1094720 TCCAGCCATAAAAATGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1094661 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||| ||||| || || || || || |||||||| | | || | Sbjct 1094660 TTAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATTTTGAGAACAGTTT 1094601 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||| ||||||| | |||| | || || |||| Sbjct 1094600 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1094550 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||| || || | || ||||||| || | ||| Sbjct 1083468 ACTCGTTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGATCTCGGGCACGTTGC 1083409 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| |||||||| | || |||||| | | || || ||||||| ||| Sbjct 1083408 TCTTCCTTTCCTGTGTTCTTTTTTAAGTCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 1083349 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 1083348 TCCAGGTAAATAGC 1083335 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | |||||||||||||| |||||||| || ||||| || || ||| Sbjct 1075800 GTACCAGCATTGAAGAGAGTAGGAGAAGCGTGTGTAAACCACTTCTCAGAAAGAAGGTTG 1075741 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 1075740 TACGTTTCAATTGCAGCGTCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 1075681 Query 80455 ATGTGCTGAGGTCTTTCA 80472 || ||||| ||||||||| Sbjct 1075680 ATATGCTGTGGTCTTTCA 1075663 >seq30635 Length=1530594 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| || ||||| |||||||| ||||| || || | || || Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | |||||||| || |||||||| ||||||||||| || |||||||| Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGCC 527548 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 527547 ACCACTCTTTCCCC 527534 >seq2702 Length=368809 Score = 109 bits (120), Expect = 8e-19 Identities = 503/793 (63%), Gaps = 90/793 (11%) Strand=Plus/Plus Query 49618 AAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT-TTG 49673 |||||| |||| | | ||| ||| ||| | || ||||| |||||||| | ||| Sbjct 317127 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGATCTGACATCACTCCCATCCTCTTG 317186 Query 49674 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 49733 |||||||| || | || || || ||||| || || ||||||| ||| ||||||||||| Sbjct 317187 ATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCCTTCCAGTGAAATATTTTCCAT 317245 Query 49734 GAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA--------AT------ 49779 ||| ||||| ||||| || | |||| | ||||| | || || Sbjct 317246 GAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCACAGCTGGAGCATAAGCCT 317305 Query 49780 -TCAGAAATCAATCTATCCGCGACAAATTCTATATA--TGTT--TTCATCATTTCACAAT 49834 |||| | ||| |||| | |||||||| || | || | ||||| | ||| | Sbjct 317306 GTCAGCCACAAATTCATCCTCCACAAATTCAATGTGGCTGCTGCTTCATTAAAATACAGT 317365 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT-AAGAAATTCTTGTTCAATGGATACC 49893 |||| || || || || | | ||| || ||||| | || || ||| || Sbjct 317366 TCATCCCAATGAGCCACACAGACAAGGCCTTTGTGAAGAACTGCT-GT---ATGCTCACA 317421 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAA 49951 |||| || || || | | || | ||| | || ||| || | | || || | Sbjct 317422 GCATTGGTAATTATTTCTTTTAC--TCTCTGCTCTTATGGTTTGTGTACCAGGTGCTTGA 317479 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||| ||| || || || ||||| | |||||| ||||| || || || || ||||||| Sbjct 317480 ACATCAGACAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTGATAAGCTCTTTGGAAA 317539 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || ||||| || | || ||||| || |||| Sbjct 317540 ATGT----------------------TTCTTGAGCCAGAACAGTGATGCAAAAGAACCAG 317577 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 |||||||||||||||| || || ||||| || |||| |||||||| | || Sbjct 317578 AAAAGAAGATTCCTTCGACAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCT---- 317633 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA---TCGTTTCTA 50188 || |||| ||||||| | || ||| | ||||| | Sbjct 317634 ------TC----TTTGTCCCCAATCCA-----------ATGCAGGGCCCAGTTGTTTCAA 317672 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 ||||||| |||||| | | |||| || |||||||| ||||| || || ||||| Sbjct 317673 TGGCATTGAAGAGAAATTCCCTTTCGTTGGAATCTTTAATGTAAGTGTCAATACGAAGAC 317732 Query 50249 TATACATTTCCGAATG--AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 |||||||||| ||||| || |||| ||||| || || || || |||||||| | Sbjct 317733 TATACATTTCAGAATGGCAA---TTTCCATGGCAATTTGGAAGCCATAGAAACAGTAGGT 317789 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCG-TTCAGCTAAATTTTCATTCACTATTCCGT 50365 || |||| || |||||| | ||| | | || | || |||||||| |||| || | Sbjct 317790 TTCCATAATTTGAACTTCTTGGCTGAATTGCTGCATC-AAGTTTTCATTTACTAGGCCAT 317848 Query 50366 CACTGGCTGCAAA 50378 |||| ||||||| Sbjct 317849 CACTCACTGCAAA 317861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716877369680640