Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq14035 192 6e-44 seq26070 129 6e-25 seq30635 120 3e-22 seq2702 91.5 1e-13 >seq14035 Length=1410301 Score = 192 bits (212), Expect = 6e-44 Identities = 486/731 (66%), Gaps = 31/731 (4%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 226451 TTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTC 226392 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||| || |||||||||||| | | || | | | | | || || || | | | Sbjct 226391 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCAGCTCGAGCATAAG 226332 Query 13703 TCTATCAGCAATAAACTCAATATATTGA----GACATTAAATCACAATTCATACCTATTA 13758 || || || | ||| ||| | | | | ||||||| || ||||| || || | Sbjct 226331 CCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAATGA 226272 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 |||| ||||| | | | | | || | |||| |||||||| | |||| Sbjct 226271 GTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCT---TGATAA 226215 Query 13819 TAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 | || | | ||| | || || | | || || || || || | ||| | Sbjct 226214 TGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGG 226155 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| ||||| || | ||||||||||| || |||||||| || |||||||| | || | Sbjct 226154 CAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGG 226095 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||||| ||||| ||| || | ||| ||||||| ||||| || || |||||||| |||| Sbjct 226094 GCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTC 226035 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || || ||||| ||| | ||||||||| | | || || |||| | | | | Sbjct 226034 CTTCCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGC-TTCTTGTCCCA-ACGC 225978 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 | ||||| |||| || || | | || ||| |||||||| ||||||| | Sbjct 225977 A-----AGGCCCAGTCAG---CCTTCTTCACACAAGGCATCGTTTCAATGACATTAAAGA 225926 Query 14116 AATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | ||||| | ||||| | | ||| | |||| |||||||| | || ||| |||| Sbjct 225925 GAAATTCCCTTTCTTTGGAATCTTTA-----ATGTGTCAATAAGAAGACTGTACGTTTCG 225871 Query 14175 GAGTGTAT----GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 || |||| |||||||| || | || | ||||| || || | ||||||| Sbjct 225870 GAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAAT 225811 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| | |||| || |||| |||||||| ||||| |||||||| ||||| Sbjct 225810 TTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGC 225751 Query 14291 AAAAAATGCCA 14301 ||| || |||| Sbjct 225750 AAAGAAAGCCA 225740 >seq26070 Length=15207027 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| ||||| || || |||||||| | || ||||||| ||||||||| | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||||| ||||| || || |||||||| ||||| || || |||||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 5605465 CTACAACACGTTCTCC 5605480 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | |||||||| | ||||| || ||||||||||| || || ||| Sbjct 5603786 GACATCACTCCCATCCTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCT 5603845 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||||||||| || |||||||||||| Sbjct 5603846 TCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 5603881 >seq30635 Length=1530594 Score = 120 bits (132), Expect = 3e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| || || ||||| |||||||| || | ||| ||||| | |||| ||| ||| Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||||||||| ||||||||||| ||||||||||| ||||| || || |||||||| || Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGC 527549 >seq2702 Length=368809 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTT-TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACC 13624 || || || ||||| | ||||||||||| ||||| || |||||||| || || || || Sbjct 317166 GACATCACTCCCATCCTCTTGATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCC 317224 Query 13625 TTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||||||| ||||||||||| || |||||||||||| Sbjct 317225 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 317261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478798670918400