Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq14035 154 1e-32 seq26070 123 2e-23 seq30635 120 3e-22 seq2702 82.4 7e-11 >seq14035 Length=1410301 Score = 154 bits (170), Expect = 1e-32 Identities = 474/728 (65%), Gaps = 25/728 (3%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||||| |||||||| ||||| || || ||||||||||| |||||||| Sbjct 226451 TTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTC 226392 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| || || ||||||||| | | || | | | | | || || || | | | Sbjct 226391 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCAGCTCGAGCATAAG 226332 Query 13491 TCTATCAGCAATAAACTCAATATATTGA----GACATTAAATCACAATTCATACCTATTA 13546 || || || | ||| ||| | | | | ||||||| || ||||| || || | Sbjct 226331 CCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAATGA 226272 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 |||| ||||| | | | | | || | |||| |||||||| | | || Sbjct 226271 GTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTTGATAATGG 226212 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | ||| | | | | || || | | || || || || || | ||| |||| Sbjct 226211 TTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGGCAA 226152 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 | ||||| || | ||||||||||| || |||||||| || |||||||| | || |||| Sbjct 226151 AGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGGGCA 226092 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 ||| ||||| ||| || | ||| ||||||| || || || || |||||||| ||||| | Sbjct 226091 TCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTT 226032 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 | || ||||| ||| | ||||||||| | | || || |||| ||| Sbjct 226031 CCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGC-TTCTTGT------CCCAAC 225980 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| |||| || || | | || ||| ||||| || |||| || | | Sbjct 225979 GCAAGGCCCAGTCAG---CCTTCTTCACACAAGGCATCGTTTCAATGACATTAAAGAGAA 225923 Query 13907 GTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 |||| | ||||| | | ||| | |||| |||||||| | || ||| |||| || Sbjct 225922 ATTCCCTTTCTTTGGAATCTTTA-----ATGTGTCAATAAGAAGACTGTACGTTTCGGAA 225868 Query 13966 TGTAT----GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 |||| |||||| | || | || | ||||| ||||| | ||||| | || Sbjct 225867 CGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAATTTA 225808 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 | || | |||| || ||||||||||||| || || |||||||| |||||||| Sbjct 225807 AAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGCAAA 225748 Query 14082 AAATGCCA 14089 || |||| Sbjct 225747 GAAAGCCA 225740 >seq26070 Length=15207027 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| ||||| || || |||||||| | || ||||||| ||||||||| | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 5605465 CTACAACACGTTCTCC 5605480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | |||||||| | ||||| || ||||| ||||| || || ||| Sbjct 5603786 GACATCACTCCCATCCTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCT 5603845 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||||||||| || || ||||||||| Sbjct 5603846 TCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 5603881 >seq30635 Length=1530594 Score = 120 bits (132), Expect = 3e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| || || ||||| |||||||| || | ||| ||||| | |||| ||| ||| Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||||||||| ||||| ||||||||||||||||| ||||| || || |||||||| || Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGC 527549 >seq2702 Length=368809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTT-TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACC 13412 || || || ||||| | ||||||||||| ||||| || ||||| || || || || || Sbjct 317166 GACATCACTCCCATCCTCTTGATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCC 317224 Query 13413 TTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 ||||||||| ||||||||||| || || ||||||||| Sbjct 317225 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTT 317261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477661677776640