Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq14035 183 3e-41 seq26070 120 3e-22 seq30635 114 1e-20 seq13819 100 2e-16 >seq14035 Length=1410301 Score = 183 bits (202), Expect = 3e-41 Identities = 488/735 (66%), Gaps = 37/735 (5%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||||| |||||||| ||||| || || ||||| | ||||||||||| Sbjct 226451 TTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTC 226392 Query 12922 CATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||| || || || ||||||| || | ||| | || | | || | || || | Sbjct 226391 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTT----AAAGCCCAGCTCGAGCA 226336 Query 12978 ACAATCTGTCAGCAACAAACTCTATGT----ACTGTTTCATTAAATCACAGTTCATTCCT 13033 | ||||| || ||||| || ||| || |||||||| |||||||| || Sbjct 226335 TAAGCCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCA 226276 Query 13034 ATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATA 13093 || | ||| ||||||| ||| || | | | | | |||| || || | |||| Sbjct 226275 ATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTTGATA 226216 Query 13094 ACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACAT 13153 | | || ||| | | |||| |||| | | || ||||| ||||||| ||| Sbjct 226215 ATGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAG 226156 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||| ||||||||||| || |||||||| || || || || || |||||||| || || Sbjct 226155 GCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCG 226096 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| || |||| ||| || | ||| ||||| | ||||| ||||| ||||| || ||| Sbjct 226095 GGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATT 226036 Query 13274 CCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTAT 13332 ||||| || |||||| ||| |||| | ||| ||||| | | || | || | | Sbjct 226035 CCTTCCAC-AATGCAAAAGCT-GCAACACGTTCTCCATA--TGCAGCTTCTTGTCCCAAC 225980 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 || |||||||| || || || || || ||| |||| || | ||||| Sbjct 225979 GCA-----AGGCCCAGTCAGCCTT---CTTCACACAAGGCATCGTTTCAATGACATTAAA 225928 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAA-GTATCTATCAATAAG-CTATACATT 13450 | | | || |||| || | || | ||| || || || || ||| || ||| || Sbjct 225927 GAGAAA-----TTCCCTTTCTTTGGAATCTTTAATGTGTCAAT-AAGAAGACTGTACGTT 225874 Query 13451 TCTGAATGAATA----TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 || ||| | ||| ||||||| || | ||||| ||||| ||||| | || || | Sbjct 225873 TCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGT 225814 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 | | || ||| | |||| || | |||||||| || ||||| || ||||| || Sbjct 225813 AATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGC 225754 Query 13567 AGCaaaaaaaGCAAG 13581 ||||| ||||| || Sbjct 225753 TGCAAAGAAAGCCAG 225739 >seq26070 Length=15207027 Score = 120 bits (132), Expect = 3e-22 Identities = 103/126 (82%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || |||||||| ||||| ||||| || |||||||| || Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||| | ||||| ||||| ||||| || |||||||| || || ||||| ||| Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 5605466 Query 13295 ATCAAC 13300 | |||| Sbjct 5605467 A-CAAC 5605471 >seq30635 Length=1530594 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || |||||||| || || || ||||| || |||| ||| | Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | |||||||||||||||||| || || ||||| || |||||||| || || ||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 527549 CCACCACTCTTTCCCC 527534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||||||| ||||||||||||| || | Sbjct 535464 AATCTGTCAGCTACAAACTCAATATACTGTTTCATTAAAACACAGTTCATTCCAATGAGG 535405 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 535404 CCAACTGGCAAGGCTTCTGTTAAAAA 535379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| |||||||| |||||||| |||||||| ||||| |||||| Sbjct 549890 TGATACTCTGAAACTCGTTTCTCAAAAAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 549831 Query 12923 ATAAAATCGAAAGGATT 12939 |||||||| |||||||| Sbjct 549830 ATAAAATCAAAAGGATT 549814 >seq13819 Length=2138633 Score = 100 bits (110), Expect = 2e-16 Identities = 394/602 (65%), Gaps = 32/602 (5%) Strand=Plus/Minus Query 13132 TAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAG 13191 ||| ||||| ||||||| ||| ||||| ||| ||||||| || |||||||| | | || Sbjct 1575468 TAGGTGCTTGAACATCAGACAGGCAAAGTCATAGTGCAAACCCTCATCTCTG-TAAAAAG 1575410 Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC-GTTTTTTAATCCAAAATATAGCAG 13250 ||| | ||||| || |||| ||||| || |||| | |||| |||| || || || Sbjct 1575409 CTCATCGGAAAACGTAAGACTGGGCATCAGTCCTCAGGTTTTGAATCAGAATAATTACA- 1575351 Query 13251 CAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCAT 13310 |||| |||| || || || |||||||| | | |||| |||| || Sbjct 1575350 CAAAATAACCAGAGAAGAAGATTCCTTCCTCAGTGACAAAGGCTA------------CA- 1575304 Query 13311 ACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAG 13369 | ||| | ||| | | |||| | || ||| | | || || || | | || Sbjct 1575303 ATGTAGCTTCTTTGTCCCCAGTCCAGCCCAAGACCAAGTCTCCCTTCTTCTTCATAGGAG 1575244 Query 13370 TTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG---TCTAAAATATAA 13426 ||| |||| || | || || | | |||| ||| || ||| ||| | ||| Sbjct 1575243 G-CATTCTTTCAATGCCATTGAAAAGA-AATTCCTTTTCT--CTGGAATCTTTAGGGTAA 1575188 Query 13427 GTATCTATCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACC 13485 || || | ||| ||| | |||||||| ||||| || |||||| | || |||||||| || Sbjct 1575187 GTGTCAA-CAAGAAGACAGTACATTTCAGAATGTATGTTTTCCGTGGCAATTTGGAAGCC 1575129 Query 13486 ATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTC 13545 ||| ||||| | || | || | |||||||| | |||| || ||| |||||| Sbjct 1575128 ATAGAAACAGCGGGCTTATGTAATTTGAACTTCTTGGCTGAATCGCTCCACTACGTTTTC 1575069 Query 13546 GTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAA-Atttttttt 13604 || ||| | ||| || || |||| |||| || ||| | | | || || | | || Sbjct 1575068 ATTTACTGTGTGGTCGCTCGCTTCAAAGGAAGCCAGAATGAGATACAAAATATCTCTCTT 1575009 Query 13605 CGTTTTCTGACAACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACG 13663 || || | | ||| ||| | ||||| || || || | ||||||||||||| | Sbjct 1575008 CGGGTT-TCAGGGCTTC--CCAGTGCTGGATG-TCCTTGGAGAGATCTACCTCCTCAGCT 1574953 Query 13664 GTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGA 13723 ||||||| | | ||| ||||| |||||| |||| ||||| | ||| || |||| Sbjct 1574952 GTCCAAACGGGGTCCTTAGCTTTCTTGTACATCTTCCAGATATCATGATATTCACTGGGG 1574893 Query 13724 AA 13725 || Sbjct 1574892 AA 1574891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430168373372352