Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq32768 125 6e-24 seq31475 93.3 4e-14 seq5174 89.7 5e-13 >seq32768 Length=2389516 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||| | || ||||| || | || |||||||| ||||||||| ||| || |||||| Sbjct 439733 GGTTACTTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGATG 439792 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || |||||||| || || || || ||||||||||||||||| || || |||||||| ||| Sbjct 439793 CCCCAGGCGGAGAACCATGGACCAGACATCAAAGAGCACGTGAATTCTCTGGGAGAGAAG 439852 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || || ||||| ||||| Sbjct 439853 CTGAAGACCCTAAGGCTGCGCCTGCGGCGCTG 439884 >seq31475 Length=48416 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 || |||| || || ||||| || || || || || || || ||||| | || || Sbjct 35980 ATCCGTTTACAAATGAGCTGTGCAATTTGATCACCTTTTTTTACTTCAAACTT-CTCCTT 35922 Query 5375 C-CGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGC 5433 | | || ||||||||||| || || ||||| |||| || ||||| || || || ||||| Sbjct 35921 CTCCAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGC 35862 Query 5434 GCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCA 5493 || || || || |||||||| || || | ||| ||| |||| |||| | ||| ||||| Sbjct 35861 TCCTACATCTATGAAGTGTTTTACAGCCAAGCCAGAATGTGGAGCTACTCTTCCATAGCA 35802 Query 5494 ACCAG 5498 |||| Sbjct 35801 CCCAG 35797 >seq5174 Length=8554236 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 5351 TTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGG 5410 || ||||| ||||| | | || || || ||||||||||| | || ||||| | || Sbjct 7452608 TTTTTAACTTCAAACT---TCTTCCCAAAATTAAACAGCACACCACCAACATTTCATCTA 7452552 Query 5411 TAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAA 5470 || ||||| || || || ||||| || || || || |||||||| || || | ||| ||| Sbjct 7452551 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTACAGCCAAGCCAGAA 7452492 Query 5471 CGTGGTGCTATGCGTCCGTAGCAACCAG 5498 ||||| |||| | ||| ||||| |||| Sbjct 7452491 CGTGGAGCTACTCTTCCATAGCACCCAG 7452464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446883017925120