Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq15815 154 1e-32 seq5010 91.5 1e-13 >seq15815 Length=3425397 Score = 154 bits (170), Expect = 1e-32 Identities = 385/578 (67%), Gaps = 10/578 (2%) Strand=Plus/Plus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||| ||||| || || | || ||||||| | ||||| || || | ||||| |||||| Sbjct 2366396 GGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAA 2366455 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 || | || ||||||| | | | ||||| || || | | || | || | || || Sbjct 2366456 ACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCG 2366514 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 |||||||| | || || | |||||||||||||| ||||| || || | ||| | || Sbjct 2366515 ATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGT-ACC 2366572 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 || ||||||||||| || || || || ||||| | | ||| || |||| || | Sbjct 2366573 TCCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAG 2366632 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 | | || | || || || || || | ||||| ||||||||||| ||| || Sbjct 2366633 GACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTTGGGTTCCAGGCACAC---AT 2366689 Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748 ||| | ||| || | |||| |||| ||| || ||||||| || | Sbjct 2366690 GATTCTTCTG---TCAGTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCTGC 2366746 Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808 || || ||||| || | ||| || |||| |||||||| |||| | ||||||| Sbjct 2366747 TCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCACTG 2366806 Query 25809 GAACCCGTACACCGGTCCTAGGTCTCC-ATCTTCCCTGTGCTCAAAGCCCCTCTTATCCA 25867 ||| || || || || | ||||| || ||| || ||| || || | |||| Sbjct 2366807 GAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTGGAGAATCCCTAGGCTGTCCA 2366866 Query 25868 AAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 25927 |||||| | ||| |||||||| |||||||| || ||||| | ||| || ||||| | Sbjct 2366867 GAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTTTAG 2366926 Query 25928 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGcc 25965 |||||||| || | | ||||| |||| |||| || Sbjct 2366927 CATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCC 2366964 >seq5010 Length=4126613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || ||||| Sbjct 1439398 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTC 1439457 Query 25833 TCCATCTTCCC-TGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || |||| ||| || ||| | |||| |||||||| ||| |||||||| | Sbjct 1439458 CCCTTCCTCCCGAGTG-GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 1439516 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| || || ||| | ||| || ||||| | ||||| || || Sbjct 1439517 CCCAGATTTTCACTCCCCTGGAGGACAGTTCTTTAGCATTTGTAGATCC 1439565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| ||||| || || | ||||| Sbjct 1433179 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCAAGGCCCATA 1433238 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| | | |||||| ||||| || Sbjct 1433239 T-CTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCA 1433297 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 1433298 GAGGGCATGGCAAGGAGGCAGTGCCATCAG 1433327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339495158305248