Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq31811 84.2 3e-11 >seq31811 Length=2146551 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||||||||||||| | || || || | ||| |||| || |||||||| ||||| || | Sbjct 1825055 AGGCTGTAAACATGTTAAGGGCATCCTGTTATATGGCCCCCCTGGTTGTGGTAAGACTCT 1825114 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618 |||||||| |||| |||| | | ||| | || || || | || ||||| Sbjct 1825115 CTTGGCTCGACAGATTGG-CAAGATGCTGAATGCAAGAGAACCC--AAGGTGGTCAATGG 1825171 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 || ||| | | ||||||||||| || || ||||| ||||| || | ||| | ||| Sbjct 1825172 GCCAGAAATCCTTAACAAATATGTGGGCGAATCAGAGGCTAACATTCGTAAGCTTTTTGC 1825231 Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 1825232 TGATGCTGAAGAGGAGCAAAGGA 1825254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594717676761600