Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq32768 145 8e-30 >seq32768 Length=2389516 Score = 145 bits (160), Expect = 8e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| ||| |||| || || ||| |||| || ||||||||||||||||||| |||||| | Sbjct 439731 AGGGTTACTTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGA 439790 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || || || | || || ||||||||||||||| |||||||| |||| Sbjct 439791 TGCCCCAGGCGGAGAACCATGGACCAGACATCAAAGAGCACGTGAATTCTCTGGGAGAGA 439850 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||||||||||||| ||| |||| Sbjct 439851 AGCTGAAGACCCTAAGGCTGCGCCTGCG 439878 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || |||||||| ||||||||||||||||||||||||||||| || || |||| | Sbjct 441847 AGCTCCAAGAAAAAGGTGTCTACAAAGCCATGAGTGAATTTGACATCTTCATCAACTGCA 441906 Query 10419 TAGAAGCATACATGACCATGAA 10440 |||||||||||||||| |||| Sbjct 441907 TAGAAGCATACATGACAGTGAA 441928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546318817013760