Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq33482 141 1e-28 seq12175 132 7e-26 seq14520 91.5 2e-13 >seq33482 Length=11402808 Score = 141 bits (156), Expect = 1e-28 Identities = 183/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||||| | ||||| || || | || ||| ||| || ||||| Sbjct 7132388 TCACCTATCAGGATGAGTCTGCTTGTCTGGAATAGCCGCTCATCATCCCACTCAGGATGC 7132329 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || | || ||||| ||||||||||| || |||| |||||||| || || |||||| Sbjct 7132328 TCTTGTCTGAGCACATCACACACTCTGTTATGCTCCCGAAGCCAGATGGTGGCATACATC 7132269 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || | |||||||||||| ||||| |||| || || || || | |||| | || || Sbjct 7132268 ATCAAACCAGGCACCAGACCAAAGACCTCCTGCCCCACGGCAAAGCGCAGGTGCTCAGGG 7132209 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 | || || || ||||| | |||||| ||||||||| | ||| ||||||| || Sbjct 7132208 GTATGAGGTGGGTACATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCT 7132149 Query 9850 CCGTCAATAATCT 9862 || ||||||| || Sbjct 7132148 CCATCAATAACCT 7132136 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| |||||||| |||||||| || ||||| | || ||| ||||| Sbjct 7130709 CTTACCCCATGACCCAGTCCCCGGGTGAAGGCAGGACCTCGTTTCTGGTCTGTCTTAAAA 7130650 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| ||||||||||| ||| |||| || || ||||| | ||| ||||| ||||||||| Sbjct 7130649 AACTGATGCGTGAAATGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCTTGGGGATCG 7130590 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | || | | |||| ||||| || ||| Sbjct 7130589 GGGATGAACTTTCTTCTTAAAAGAACTTTTTGCAGAAC 7130552 >seq12175 Length=10297911 Score = 132 bits (146), Expect = 7e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || ||||| |||||||| |||||||| | || ||||||||| ||| Sbjct 106081 AATCCCATCTCACCACCGAAAGTGCTGGGCTTCCAGTACTCTGGAGAGCAGATGGGATTC 106140 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | || ||||| || |||||| Sbjct 106141 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 106200 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||| | | || || | || ||||||| || ||||||||| Sbjct 106201 GAGTTAGGCTGGCACTTTTCAAGAAGCAACCCAGGATAGAACTCCAATGCGTCGATGTCT 106260 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || ||||| || ||||| ||||||| Sbjct 106261 CCATACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTG 106303 >seq14520 Length=798628 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 8768 CCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTG 8827 || || ||||| || |||||||| || |||||||| || | || || ||||| Sbjct 91987 CCAAAAGTGCTTGGCTTCCAGTAGTGAGGAGAGCAGATAGGATTAGACA--AGTCCTTTC 91930 Query 8828 AGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGC 8887 | ||| || || || | | || | ||| |||| || |||| || | ||||| ||| Sbjct 91929 AAGGAGAATGGTGCTCTGACTTCTACTATGGTCTCCCCAAAGACAGCATCTGGACGAGGC 91870 Query 8888 TTTTCCACCAAGAATCCGGTG-TACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCT 8946 |||| ||||| ||| | | ||||||||||||| | |||||| ||||| || ||| Sbjct 91869 TTTTTCACCA-GAAGAGGAGGATACAACTCCACAGTATTGATGTCACCGTAGAGAGCCTC 91811 Query 8947 GAGTTCGGCAGCGATTTCCTTTTCTCCTGTT 8977 | || ||||| |||||||| ||||||||| Sbjct 91810 CAACTCCGCAGCCATTTCCTTATCTCCTGTT 91780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707152245757440