Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq23020 98.7 9e-16 seq33511 95.1 1e-14 seq16386 95.1 1e-14 seq9583 89.7 5e-13 seq17823 84.2 2e-11 >seq23020 Length=748909 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || | || | ||||| ||| || ||||| || | ||| || || | Sbjct 60972 CCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 60913 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || |||||||| ||| ||||||| | || ||||| || || || Sbjct 60912 AGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 60853 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| ||| ||||| | | || || Sbjct 60852 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 60793 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 60792 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| || || ||||| || | ||| ||||| | |||| | ||| |||||||| Sbjct 61177 GTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTG 61118 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | || ||||| || || || || || || ||||| | || || Sbjct 61117 CTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTT 61058 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| ||| ||||| | | || || || | |||||||| || || || Sbjct 61057 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 60998 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 60997 CAGGGTCTTCACGAAGATCTGCATGC 60972 >seq33511 Length=8354299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94794 GCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAAT 94853 ||| ||||| || || || || || || || | ||| || ||| | || | || Sbjct 8199649 GCAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCAT 8199590 Query 94854 CCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGT 94913 |||||||||| |||||| | ||| | | ||||| || ||| | || ||||| |||| Sbjct 8199589 CCTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGT 8199530 Query 94914 CATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGG 94973 | || || || |||||||| ||| || ||| | | || || |||| ||||||| Sbjct 8199529 CCTAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGG 8199470 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 | || ||||| || || ||||||||||||||| Sbjct 8199469 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8199438 >seq16386 Length=4700455 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || ||| || ||| | || || Sbjct 632465 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTC 632406 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| || || | || || |||||||| | Sbjct 632405 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632346 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | |||||| | | || || || | |||||||| || Sbjct 632345 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632286 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 632285 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| | ||| || || ||||| || | | | || ||| || ||| | || || Sbjct 631325 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631266 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | || ||||| || || | || || |||||||| | Sbjct 631265 CAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631206 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | |||||| | | || || || | |||||||| || Sbjct 631205 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631146 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 631145 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631116 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| | ||| || || ||||| || | | | || ||| || ||| | || || Sbjct 631553 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631494 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| || || | || || |||||||| | Sbjct 631493 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631434 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | || ||| | | || || || | |||||||| || Sbjct 631433 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631374 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 631373 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| | ||| || || ||||| || | | | || ||| || ||| | || || Sbjct 631781 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631722 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| || || | || || |||||||| | Sbjct 631721 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631662 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | || ||| | | || || || | |||||||| || Sbjct 631661 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631602 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 631601 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| | ||| || || ||||| || | | | || ||| || ||| | || || Sbjct 632009 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631950 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| || || | || || |||||||| | Sbjct 631949 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631890 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | || ||| | | || || || | |||||||| || Sbjct 631889 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631830 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 631829 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| | ||| || || ||||| || | | | || ||| || ||| | || || Sbjct 632237 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 632178 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| || || | || || |||||||| | Sbjct 632177 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632118 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||||||| | | || ||| | | || || || | |||||||| || Sbjct 632117 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632058 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||| ||||||||||| Sbjct 632057 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq9583 Length=785227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || | || | ||||| || || ||||| || | ||| || || | Sbjct 67177 CCTCCCCTGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 67118 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | | || | ||| |||||||| || ||| ||||||| | || ||||| || || || Sbjct 67117 AGAACGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 67058 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || | ||| | || || ||||| ||| ||| ||||| | | || || Sbjct 67057 ATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACT 66998 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 66997 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 66951 >seq17823 Length=3576200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| || || ||||| || | ||| || || || || || | ||| |||||||| Sbjct 944372 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTG 944313 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || ||||| | || ||||| || || ||||| || || ||||| | || || Sbjct 944312 CTTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATT 944253 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | | ||||| | | || || || | |||||||| || ||||| Sbjct 944252 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 944193 Query 94984 AAGAGTTTTCACAAAGATCTG 95004 || || |||||||||||||| Sbjct 944192 CAGGGTCTTCACAAAGATCTG 944172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447422770287360