Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq14035 140 3e-28 seq30635 102 9e-17 seq26070 98.7 1e-15 seq2702 98.7 1e-15 >seq14035 Length=1410301 Score = 140 bits (154), Expect = 3e-28 Identities = 359/537 (67%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||||| ||| || | ||||| || | |||| ||| ||| ||||||| | ||| Sbjct 226518 ATTTACTTAGAAGTTGGCATCCAAGGTGAAAGAATTCTCTGTCGGACTTGACATCACTCC 226459 Query 21181 CATTTT-TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATA 21239 || | |||||| |||| ||||| ||||| || || || ||||| ||||||| ||| | Sbjct 226458 TATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAA 226399 Query 21240 TAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTG 21299 || |||||| || |||||||||||||| | | || || | ||| | ||||| || | Sbjct 226398 TATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCAGCTC-G 226340 Query 21300 ATAATAA-TCTATCTGCTACAAATTCTATATATTGAC----ACATTAATTCACAATTCAT 21354 | |||| || ||||| |||||||| | | || |||||| || ||||| Sbjct 226339 AGCATAAGCCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCAT 226280 Query 21355 ACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC 21414 || || | ||| ||||| | ||| | | | | | |||| || || | Sbjct 226279 CCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTT 226220 Query 21415 AACAATTATATTTATTATCCTAGATGTACT-AGGG---GGATACAATAATTGTTTAAACA 21470 | ||| ||| | | || || || | || | ||| | || || |||| Sbjct 226219 GATAAT--GGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTAC--CAGGTGCTTGAACA 226164 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 ||| ||| ||||| ||||| |||||||| ||||| || || || | |||||| ||||||| Sbjct 226163 TCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATG 226104 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAA 21590 | | |||||||| | ||||| || || | ||| |||||||| ||||| | || |||| Sbjct 226103 TGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAA 226044 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT 21647 |||| || || || || ||||| || | | ||||| || |||| || ||||| Sbjct 226043 AGAAGATTCCTTCCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGCTTCTT 225988 >seq30635 Length=1530594 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | |||||| ||||| || | || ||||| | ||||| || | Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 ||| ||||||||| | ||||||| ||| ||||||||||| || || || |||||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 21618 CAACTAATCGTTCACC 21633 | || | || ||| || Sbjct 527549 CCACCACTCTTTCCCC 527534 >seq26070 Length=15207027 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| ||||| || | ||||| |||||||| | ||| ||||| | ||||| || || Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | |||||||||||| ||||| | || |||||||| || || || || |||||||| || Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 5605466 Query 21620 ACTAATCGTTCACC 21633 || | ||||| || Sbjct 5605467 ACAACACGTTCTCC 5605480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||||| ||| || |||||||| || | |||| ||| ||| ||||||| | ||| Sbjct 5603737 ATTTACTTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTCGGACTTGACATCACTCC 5603796 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||| | ||||| || | ||||| || || || || || ||||| ||||||| ||| || Sbjct 5603797 CATCCTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAAT 5603856 Query 21241 AGATTCCATAAAATCAAATGGATTTTC 21267 | |||||| || |||||||||||||| Sbjct 5603857 ATTTTCCATGAAGTCAAATGGATTTTC 5603883 >seq2702 Length=368809 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||||| || || |||||||| || | |||| ||| ||| | | |||||| | ||| Sbjct 317117 ATTTACTTCGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGATCTGACATCACTCC 317176 Query 21181 CATTTT-TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATA 21239 ||| | |||||| |||| ||||| || || || ||||| ||||| ||||||| ||| | Sbjct 317177 CATCCTCTTGATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCCTTCCAGTGAAA 317235 Query 21240 TAGATTCCATAAAATCAAATGGATTTTC 21267 || |||||| || |||||||||||||| Sbjct 317236 TATTTTCCATGAAGTCAAATGGATTTTC 317263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530870401770240