Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15815 107 5e-18 seq26070 96.9 9e-15 seq30635 93.3 1e-13 seq29155 91.5 4e-13 seq14035 87.8 5e-12 >seq15815 Length=3425397 Score = 107 bits (118), Expect = 5e-18 Identities = 399/616 (65%), Gaps = 21/616 (3%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || |||||| | || ||| || |||||||| || | || || | || ||| Sbjct 2367008 TTTCCTCTGCTCACAGCCAAACGAGTATTCTGGAAGGGTGTTTTGGAGGAGTTGCTATGG 2366949 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||| ||| |||||||| || ||||| | | | | ||||| |||||| Sbjct 2366948 TTTATTAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAGGGGGGAGAAAATCTGGGAT 2366889 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG--TTGGTCTTGTCGACAACGAAGAA-GGT 111491 | |||||||| || |||||||| || ||| | || || || || | |||| || Sbjct 2366888 GCCAATGGATCCCGGGACTTTCTGGA--CAGCCTAGGGATTCTCCACTCGGCAGAAAGGG 2366831 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 || || | |||||||| || || || ||| || ||||| |||||||||||| ||| Sbjct 2366830 GACCTGAGTCCAGTTTATGGTTTCCAGTGGATGCATTTTGGAGCAGACTACAAAGATATG 2366771 Query 111552 CACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 || || || | ||| || ||| | || | | ||||| || |||||| || Sbjct 2366770 ---GATTCTGATTACTCAGGTCAAGGAGCAGACAAGCTGCAGAAAGTTATTGATACCATC 2366714 Query 111609 AAGAACAACCCAACTTCTCGTC-GCATTATTATGAGTGCATGGAACCCAAATGCATTGGA 111667 || | |||| ||| | | | | || ||| |||| ||||||||||| | | Sbjct 2366713 AAAACCAAC---ACT----GACAGAAGAATCATGTGTGCCTGGAACCCAAAAGATCTTCC 2366661 Query 111668 AAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCT 111727 ||||| || | | ||||| | | ||| |||| ||||| | ||| ||| Sbjct 2366660 TCTGATGGCGCTGGCTTCTTGTCAAGTCCTCTGCTAGTTCTATGTGGTGAATGGGGAGCT 2366601 Query 111728 TTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 || |||||| | || ||| | || | | || || || ||||| || || || || || Sbjct 2366600 GTCCTGCCAACTTTACCAGAGGTCAGGAGGTACGGGCCTGGGTGTGCCCTTCAACATCGC 2366541 Query 111788 AAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATT 111847 || || | | || | | | | ||||| || | ||| | || || | ||||| || Sbjct 2366540 CAGCTATG-TCCGCTAAGCTACATGATCGCACACATCACAGACCTGAAGTCAGGTGATTT 2366482 Query 111848 CATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACA 111907 | | || | |||||||| |||||||| || |||||||| |||| |||| || Sbjct 2366481 TGTAC-TATTTTGGGAGATGCATATGTTTACCTGAATCACATTGAGCCACTGAAAATTCA 2366423 Query 111908 GTTGAAGCGCAAACCA 111923 | | |||| ||||| Sbjct 2366422 GCTCCAGCGAGAACCA 2366407 >seq26070 Length=15207027 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || ||||| || ||||||||||| | ||| || Sbjct 5605477 GAACGTGTTGTAGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCCTTTGCATCA 5605418 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||| | | | ||||| ||||| || ||||| |||||| | || Sbjct 5605417 ATATTTTGGCTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCCAATGAGCTTATC 5605358 Query 22609 AGCCGAGATGAGG 22621 || ||||||||| Sbjct 5605357 AGTAGAGATGAGG 5605345 >seq30635 Length=1530594 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| ||||||||||| ||| ||||| ||| || ||||||||| Sbjct 527549 GCCTTTGCTGCTGTAGAAGGAATTTTCTTTTCCGGATCATTTGCTGCTATATTTTGGCTA 527608 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || ||| | | | ||||| || || || ||||||||||| | || ||| ||||||| Sbjct 527609 AAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCAAATGAACTGATCAGCAGAGATGA 527667 >seq29155 Length=1778819 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 1086340 GCTCAGCAGCTTTGGTATGCCATCATCGAGTCTCAGACAGAGACTGGTACCCCATACATG 1086399 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||||||||||| || ||||| ||| |||||||||| |||| || || || Sbjct 1086400 CTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCAT 1086452 >seq14035 Length=1410301 Score = 87.8 bits (96), Expect = 5e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||||||||| | |||||| ||||||||| ||||| |||||||| ||||| ||||| Sbjct 226374 AATCCATTTGACTTCATGGAAAATATTTCACTGGAAGGGAAGACCAACTTCTTTGAAAAG 226433 Query 22918 AGAGTTGGTGAATACCAA 22935 ||||| |||||||| ||| Sbjct 226434 AGAGTAGGTGAATATCAA 226451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300765621991232