Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq23020 114 1e-20 seq16386 104 2e-17 seq61872 89.7 5e-13 seq29155 82.4 7e-11 >seq23020 Length=748909 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || | || | ||| |||||||| || ||||||||||| Sbjct 61202 AGCCACCCCGGAGACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAG 61143 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| ||| |||| | | ||||||||| || | Sbjct 61142 ATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTG 61083 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 61082 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 61023 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || ||||| || || || ||||| ||||||||| || Sbjct 61022 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGCCT 60970 >seq16386 Length=4700455 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| ||| || |||||| | Sbjct 632470 CGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 632411 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||||||||| |||| | ||||||||| || |||| || |||||| Sbjct 632410 TCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTG 632351 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 632350 TCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 632291 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| |||||||| Sbjct 632290 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||| |||| ||| || |||||| ||| || || |||||||| Sbjct 631313 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631254 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| || |||| || |||||||| ||| || ||| Sbjct 631253 TGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631194 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || ||| ||| | || | ||| | ||| || || || || || Sbjct 631193 GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631134 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 631133 CTTCACGAAGATCTGCAT 631116 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||| |||| ||| || |||||| ||| || || |||||||| Sbjct 631541 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631482 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||| || |||| || |||||||| ||| || ||| Sbjct 631481 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631422 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||||| ||| ||| | || | ||| | ||| || || || || || Sbjct 631421 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631362 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 631361 CTTCACGAAGATCTGCAT 631344 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||| |||| ||| || |||||| ||| || || |||||||| Sbjct 631769 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631710 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||| || |||| || |||||||| ||| || ||| Sbjct 631709 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631650 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||||| ||| ||| | || | ||| | ||| || || || || || Sbjct 631649 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631590 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 631589 CTTCACGAAGATCTGCAT 631572 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||| |||| ||| || |||||| ||| || || |||||||| Sbjct 631997 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631938 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||| || |||| || |||||||| ||| || ||| Sbjct 631937 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631878 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||||| ||| ||| | || | ||| | ||| || || || || || Sbjct 631877 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631818 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 631817 CTTCACGAAGATCTGCAT 631800 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || ||| |||| ||| || |||||| ||| || || |||||||| Sbjct 632225 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 632166 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||| || |||| || |||||||| ||| || ||| Sbjct 632165 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 632106 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | ||||| ||| ||| | || | ||| | ||| || || || || || Sbjct 632105 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 632046 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 632045 CTTCACGAAGATCTGCAT 632028 >seq61872 Length=227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| ||| || |||||| | Sbjct 53 CGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 112 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||||||||| |||| | | ||||||||| || ||||| || || ||| Sbjct 113 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 172 Query 131140 TC 131141 || Sbjct 173 TC 174 >seq29155 Length=1778819 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | ||||| || || ||||||||||||||||| || ||||| || || || Sbjct 1086483 TACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTT 1086424 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794 || ||| || | || |||||||||||||| || |||||||| ||| | ||| | Sbjct 1086423 CCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCAGTCTCTGTCTGAGACTCGAT 1086364 Query 145795 GAT 145797 ||| Sbjct 1086363 GAT 1086361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471098416803840