Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23020 120 2e-22 seq16386 114 1e-20 seq9583 111 1e-19 seq17823 105 5e-18 seq73829 89.7 4e-13 seq61872 84.2 2e-11 >seq23020 Length=748909 Score = 120 bits (132), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || || | | || || | ||| Sbjct 60948 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGT 60889 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| || | |||||| ||||| || || Sbjct 60888 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTG 60829 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| |||| ||||||||| || |||| Sbjct 60828 GC--CTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 60771 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || || || |||||||||||| Sbjct 60770 TCAGGGTCTTCACGAAGATCTGCATTTTG 60742 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || |||||||| || | | || | | || |||| || Sbjct 61176 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGC 61117 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| ||||| || | |||||| ||||| || || Sbjct 61116 TTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTG 61057 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| |||| ||||||||| || |||| Sbjct 61056 GC--CTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGG 60999 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || |||||||| Sbjct 60998 TCAGGGTCTTCACGAAGATCTGCAT 60974 >seq16386 Length=4700455 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || ||| | |||| Sbjct 632467 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 632408 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || ||| ||| ||||| | | |||||||||||| Sbjct 632407 TCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCC 632348 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | ||||||| |||| |||||||| Sbjct 632347 TGGATCTTTGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 632290 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 632289 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| ||||||||||| || ||| ||||||||| || ||| | |||| |||| || | Sbjct 631317 GCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCT 631258 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| ||| | || |||| ||| ||||| | | |||||||||||| || |||| Sbjct 631257 TGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTG 631198 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | ||||| | ||||||| |||| ||||||||| || || || Sbjct 631197 C--CTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 631140 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 ||| || || || || ||||||||| Sbjct 631139 CAGGGTCTTCACGAAGATCTGCATT 631115 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| ||||||||||| || ||| ||||||||| || ||| | |||| |||| || | Sbjct 631545 GCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCT 631486 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| ||| | || ||| ||| ||||| | | |||||||||||| || |||| Sbjct 631485 TGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTG 631426 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | || || | ||||||| |||| ||||||||| || || || Sbjct 631425 C--CTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 631368 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 631367 CAGGGTCTTCACGAAGATCTGCAT 631344 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| ||||||||||| || ||| ||||||||| || ||| | |||| |||| || | Sbjct 631773 GCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCT 631714 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| ||| | || ||| ||| ||||| | | |||||||||||| || |||| Sbjct 631713 TGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTG 631654 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | || || | ||||||| |||| ||||||||| || || || Sbjct 631653 C--CTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 631596 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 631595 CAGGGTCTTCACGAAGATCTGCAT 631572 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| ||||||||||| || ||| ||||||||| || ||| | |||| |||| || | Sbjct 632001 GCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCT 631942 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| ||| | || ||| ||| ||||| | | |||||||||||| || |||| Sbjct 631941 TGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTG 631882 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | || || | ||||||| |||| ||||||||| || || || Sbjct 631881 C--CTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 631824 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 631823 CAGGGTCTTCACGAAGATCTGCAT 631800 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||| ||||||||||| || ||| ||||||||| || ||| | |||| |||| || | Sbjct 632229 GCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCT 632170 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| ||| | || ||| ||| ||||| | | |||||||||||| || |||| Sbjct 632169 TGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTG 632110 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | ||| || | | | || || | ||||||| |||| ||||||||| || || || Sbjct 632109 C--CTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 632052 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 632051 CAGGGTCTTCACGAAGATCTGCAT 632028 >seq9583 Length=785227 Score = 111 bits (122), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || | | | || |||| || Sbjct 67153 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCTTCCAGCTGC 67094 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| || | |||||| | ||| || || Sbjct 67093 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTG 67034 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| ||||| ||||||||| || || | Sbjct 67033 GC--CTTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAG 66976 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || || || |||||||||||| Sbjct 66975 TCAGGGTCTTCACGAAGATCTGCATTTTG 66947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || || | | | || |||| | | Sbjct 67381 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCTTCCAGTGGC 67322 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| ||||| || | ||| || ||||| || || Sbjct 67321 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTG 67262 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||| | | | | |||| || ||||||| ||||| ||||||||| || |||| Sbjct 67261 GC--CTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGG 67204 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || || |||||||| Sbjct 67203 ACAGGATCTTCACGAAGATCTGCAT 67179 >seq17823 Length=3576200 Score = 105 bits (116), Expect = 5e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || | | | | || |||| || Sbjct 944371 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTGC 944312 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||||| | || |||| ||| ||||| || | ||| || ||||| || ||| Sbjct 944311 TTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTG 944252 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| |||| ||||||||| || || | Sbjct 944251 GC--CTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 944194 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || ||||| ||||| ||||| Sbjct 944193 TCAGGGTCTTCACAAAGATCTGTGTTTTG 944165 >seq73829 Length=246 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || || | | | || |||| | Sbjct 235 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCTTCCAGCGGC 176 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| ||||| || | ||| || ||||| || || Sbjct 175 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTG 116 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||| | | | | |||| || ||||||| ||||| ||||||||| || |||| Sbjct 115 GC--CTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGG 58 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || || |||||||| Sbjct 57 ACAGGATCTTCACGAAGATCTGCAT 33 >seq61872 Length=227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || ||| | |||| Sbjct 56 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 115 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 116 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404322881938240