Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15128 129 4e-25 seq22039 104 2e-17 seq19727 104 2e-17 seq7847 100 2e-16 seq28135 86.0 4e-12 seq26070 86.0 4e-12 seq3914 84.2 1e-11 seq7745 82.4 5e-11 >seq15128 Length=21160 Score = 129 bits (142), Expect = 4e-25 Identities = 86/96 (90%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 12538 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 12479 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 | |||| ||||||||||||||||||||||||||||| Sbjct 12478 TCATCCATTCATGCGCGTCACTAATTAGATGACGAT 12443 >seq22039 Length=165401 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| |||||||| ||||| || | ||| || Sbjct 77832 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAATGGGACTCTTGT 77891 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||||||||||||||||| Sbjct 77892 TCATCCACTCATGCGCATCACTAATTAGATGACGA 77926 >seq19727 Length=12937306 Score = 104 bits (114), Expect = 2e-17 Identities = 214/317 (68%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || ||| |||| | | | |||||| | |||||||||||| | | | ||| Sbjct 7911511 AACGTCAACTGTAGTGTGTCAGGCCAGTTCTATCACTACAAAATGCCCTGTTTGTT-GCC 7911453 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||| ||| | || ||||| || || || || || || | |||||| ||| | || Sbjct 7911452 AAGGTTGAGAGCAAAGGAAATGGAATCAAGACAGTTATACTTAACATGGTTGACATTGCA 7911393 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||||||| | ||| | || || || || |||||||| || || || || || || Sbjct 7911392 AAGGCGCTTAATCAGCCTCCAACGTATCCCACCAAATATTTTGGTTGTGAGCTGGGAGCA 7911333 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||| ||||||||| || || ||| ||| ||| | | ||||| ||| | | Sbjct 7911332 GAGACCCAGTTTGATGTTAAGAATGAGTGCTACATTATCAGTGGATCTCATGAGGCGAAT 7911273 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 |||||||||||| | | || || || || || ||||| || |||| || | || Sbjct 7911272 AAGCTGCAGGACATGTTGGATGGATTCGTTAAAAAATTTGTTCTCTGTCCTGAGTATGAG 7911213 Query 6474 AACCCGGAGACCGAGCT 6490 || || || || || || Sbjct 7911212 AATCCTGAAACAGATCT 7911196 >seq7847 Length=272952 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 112339 AAGCCCGTTCCCTTGGCTGTGGTTTTACTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 112398 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| | ||||||||||||||||||| Sbjct 112399 TCATCCATTCATTTGGGTCACTAATTAGATGACGA 112433 >seq28135 Length=2346816 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| | |||||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 1553510 CTCTCACCTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCCT 1553451 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1553450 GCCGGTATTTAGCCTTA 1553434 >seq26070 Length=15207027 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||| ||||||| | ||||||| || ||| ||||||| Sbjct 13080492 CTCTCTCTTCAAAGTTCTTTTCAAGTTTCCCTTAAGGTACTTCTTGACTAATGGTCTCGT 13080551 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 13080552 GCTGGTATTTAGCCTTA 13080568 >seq3914 Length=7459307 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 4166159 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4166218 Query 25957 TAATCCTTTCA 25967 | |||| |||| Sbjct 4166219 TCATCCATTCA 4166229 >seq7745 Length=1758265 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||||||||||||||||||||||||||||| | |||||||||| |||| |||||| Sbjct 69103 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATGGGTCTC 69046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334314561777056