Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14035 239 6e-58 seq32167 143 3e-29 seq29155 127 3e-24 seq30635 116 5e-21 seq26070 105 8e-18 seq2702 102 1e-16 >seq14035 Length=1410301 Score = 239 bits (264), Expect = 6e-58 Identities = 529/781 (68%), Gaps = 37/781 (5%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTT-TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 ||||| ||||| || | ||| |||||||| || | ||||| || || || || || || Sbjct 226469 GACATCACTCCTATCCTCTTGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCC 226410 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473 ||| | ||| |||||||||||||| || |||||||| || | |||| | ||||| Sbjct 226409 TTCCAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAA 226350 Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCA--TCATTTCA 32531 |||| || || | || ||||| |||||||| | | | || ||||| | Sbjct 226349 GCCCAGCTCGAGCATAAGCCTGTCTGCCACAAATTCAGTGTG-GCCACCACGTCATTAAA 226291 Query 32532 ---CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 32588 || ||||| || || ||||| || || | |||| | | || | || || | || Sbjct 226290 GTGCAGTTCATCCCAATGAGTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATC 226231 Query 32589 GAGACCGCGTCTGTTATAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAA 32645 || || | | ||||| | | ||||| | | || ||| | | | Sbjct 226230 CTCACAGCCT---TGATAATGGTTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGG 226174 Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || ||||||| ||| || || || ||||| | |||||| ||||| || || | ||| Sbjct 226173 TGCTTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCA 226114 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 |||||||| ||||| |||||||| || || | || || ||||| ||||| || ||||| Sbjct 226113 TTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAA 226054 Query 32766 GATCCAGAAAAGAAAATTCCTTCTAC--TGCCGCAAAG--GCAATAAGTCTCTCTCCATA 32821 || ||||||||||| |||||||| || ||| |||| |||| | || |||||||| Sbjct 226053 GAACCAGAAAAGAAGATTCCTTCCACAATGC--AAAAGCTGCAACACGT---TCTCCATA 225999 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | || || ||| | || | ||||| || |||||| || ||||||||||| Sbjct 225998 TGCAGC---TTCTTGTCCCAACGCAAG-GCCCAGTCAGCCTTC---TTCACACAAGGCAT 225946 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 || || || ||||||||||| | | |||| || ||||||| |||| ||||| Sbjct 225945 CGTTTCAATGACATTAAAGAGAAATTCCCTTTCTTTGGAATCTTTA----ATGTGTCAAT 225890 Query 32942 CAAAAGACTATACATTTC----CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997 | |||||| ||| |||| || || || |||||| | ||| | ||| | || |||| Sbjct 225889 AAGAAGACTGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGA 225830 Query 32998 AGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 33057 | || | || || ||||| | | |||| | |||| || | || |||||||| | Sbjct 225829 AACAGCGGGCTTCCGTAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTA 225770 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 |||| || ||||| |||||||| || |||| ||||| |||||||| | | || || | Sbjct 225769 CTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATGGGATATAAAATCTCTCTCTTCCG 225710 Query 33118 G 33118 | Sbjct 225709 G 225709 >seq32167 Length=1788516 Score = 143 bits (158), Expect = 3e-29 Identities = 307/457 (67%), Gaps = 25/457 (5%) Strand=Plus/Plus Query 61889 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 61948 || ||||| || || |||| ||| | |||| || ||||| |||||||| | |||||| Sbjct 592600 TAATACATCCCAGTCTTTAAACCCTGCTTCCAGCCATAAAAGTGCATACTGATGAGTTTG 592659 Query 61949 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62008 ||| | || || | ||| |||| |||| ||| || |||||||| ||||| || || Sbjct 592660 CCATAGTTAGGCTCAGTGATACGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 592719 Query 62009 CTGTCTGCAG-CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 62067 || | || | ||||||| | | || || || | |||||| | | ||| ||||||| Sbjct 592720 CTCT-TGAATACCATTTTGAGGACAGTTTTCTGAGAGATTTCCTACACAGTCTTATAAAG 592778 Query 62068 TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 62124 | || | || || |||| | || | ||||| || ||||| ||| ||| | Sbjct 592779 CTGATTCAGGTCATCAGGAATTTCTGATATGTTCTGGATAAATCCATTGCATGCAATACT 592838 Query 62125 CCTA-TTCTTG------------ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTC 62171 | || ||| ||||| |||||| | | | | |||| || Sbjct 592839 CTGGGTTTTTGTTTTTTTTTTAAATCTCTTCATTCAAGATT-------CCAATAAATCTT 592891 Query 62172 TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATAT 62231 | || | || |||| || | ||||||||||| |||| ||||| | ||||| || | Sbjct 592892 TCAGTAAGTGAGGATATACAATCTGAAATTCTCCTAACAAAACTCTTCAAGTGTGGATGT 592951 Query 62232 TACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 62291 | |||||||| |||| | |||||||||||| |||| ||| ||||||||||| ||||| | Sbjct 592952 TGCTGGTATAACGTTCAATAGACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAG 593011 Query 62292 GCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA 62328 |||| | || | | |||||| ||||| | ||| || Sbjct 593012 GCATCAGGGCAATAAGTAAACTGTTTCTTATACCATA 593048 >seq29155 Length=1778819 Score = 127 bits (140), Expect = 3e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| ||||||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 1091681 TACCTGAAATTCTCCCGACAAAACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAAT 1091622 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||||||||||| || | ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 1091621 GGACTCATTATTCCCTAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAA 1091562 Query 62311 ACTATTTCTAAGACCGTA 62328 ||| ||||| | ||| || Sbjct 1091561 ACTGTTTCTTATACCATA 1091544 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || |||||||||||||| || |||||| ||| | || || || |||||||| | Sbjct 1094720 TCCAGCCATAAAAATGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1094661 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || |||||||| ||||| || || || || || |||||||| | || || | Sbjct 1094660 TTAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATTTTGAGAACAGTTT 1094601 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||| ||||||| | |||| | || || |||| Sbjct 1094600 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1094550 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | |||||||||||||| |||||||| || |||||||| || ||| Sbjct 1075800 GTACCAGCATTGAAGAGAGTAGGAGAAGCGTGTGTAAACCACTTCTCAGAAAGAAGGTTG 1075741 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| ||||| || | ||| ||||| || ||||| || || | || | ||| ||| Sbjct 1075740 TACGTTTCAATTGCAGCGTCAATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 1075681 Query 63587 ATGTGCTGAGGTCTTTCA 63604 || ||||| ||||||||| Sbjct 1075680 ATATGCTGTGGTCTTTCA 1075663 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || ||||| || || | || || ||||| ||||| || ||||| | || || | Sbjct 1088819 CATAAGTTTCGTAGGGGCCATGCTCCTTGGCTAGGTCACAGCTGGCCTCCAGGGCTCCAT 1088760 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||| ||||||||||||| |||||| | ||| ||||| | || ||||| |||| Sbjct 1088759 AATAAATAGTTTCGAAGATCTGCTTATTCAATAATTGAGCTTCTTGACTCTCAAAAGGAT 1088700 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | || ||||| || ||||||| ||||| || ||||| || || || | || | Sbjct 1088699 ATCTCATCAGGATAAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGGTGGC 1088640 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 1088639 GTTTATTTGA 1088630 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||| || || | || ||||||| || | Sbjct 1083472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGATCTCGGGCACG 1083413 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| |||||||| | || |||||| | | || || ||||||| Sbjct 1083412 TTGCTCTTCCTTTCCTGTGTTCTTTTTTAAGTCAAGGAACTCAAAGATGTCTAAATGCCA 1083353 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 1083352 AGGTTCCAGGTAAATAGC 1083335 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || ||||| || |||| | Sbjct 1069427 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAAACAGCGATTCTCGCAGCTAAGA 1069368 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || | || || ||| | || || |||||||| || | Sbjct 1069367 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCAA 1069308 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1069307 GTTCCACTGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1069262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||| | || ||| || ||||| || ||||| || ||||||||||| | || || || || Sbjct 1086489 ATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCCCAGGTTCTGCTGGTT 1086430 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 ||||| |||||| | ||| || || || ||| |||| |||||||| || ||||||| Sbjct 1086429 GCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCAGTCTCTGTCTGAGA 1086370 Query 62911 TTCTATAATCGCTTTCCA 62928 || || || || | ||| Sbjct 1086369 CTCGATGATGGCATACCA 1086352 >seq30635 Length=1530594 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||||||||| | ||||||||||| |||||||||||||||||||| || |||||||| Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGC 527549 >seq26070 Length=15207027 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || |||||||| || || || ||||| || || || || | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 32803 C 32803 | Sbjct 5605465 C 5605465 >seq2702 Length=368809 Score = 102 bits (112), Expect = 1e-16 Identities = 376/592 (64%), Gaps = 73/592 (12%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || ||||||| ||| || || || ||||||| |||||| ||||| || || | || Sbjct 317473 TGCTTGAACATCAGACAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTGATAAGCTCT 317532 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 |||||||| || || || ||||| || | || ||||| Sbjct 317533 TTGGAAAATGT----------------------TTCTTGAGCCAGAACAGTGATGCAAAA 317570 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || ||||||||||| |||||||| || || ||||| || | || |||||||| Sbjct 317571 GAACCAGAAAAGAAGATTCCTTCGACAGCAGCAAAAGCTACAACATGTTCTCCATAG--- 317627 Query 32826 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA---TT 32882 ||| | |||| | ||||||| | || ||| || Sbjct 317628 ----------GTAGCTTCTTT-GTCCCCAATCCA-----------ATGCAGGGCCCAGTT 317665 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || || ||||| |||||| | | |||| || |||||||| || || ||||| Sbjct 317666 GTTTCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGAATCTTTAATGTAAGTGTCAATA 317725 Query 32943 AAAAGACTATACATTTCCGAATG--AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 ||||||||||||||| ||||| || |||| ||||| ||||| || || ||||| | Sbjct 317726 CGAAGACTATACATTTCAGAATGGCAA---TTTCCATGGCAATTTGGAAGCCATAGAAAC 317782 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC--TAAATTTTCATTCAC 33058 | | || |||| || |||||| | ||| | |||| || |||||||| || Sbjct 317783 AGTAGGTTTCCATAATTTGAACTTCTTGGCTGAAT--TGCTGCATCAAGTTTTCATTTAC 317840 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33118 || || ||||| ||||||| | | || | ||| ||||| |||| | | ||||| Sbjct 317841 TAGGCCATCACTCACTGCAAAGGAAGTCAGAATATGAGATATAAGATATCTCCCTTCTGG 317900 Query 33119 TGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 || ||||| || || | || || || | || ||| || ||| ||||||||| Sbjct 317901 -CTTCAAGGATTCC---CAGTGCTTTTCCTTGGAAAGATTCACCTCCTCCGCTGTCCAAA 317956 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229 | | ||| || ||||| | ||||||||| || ||| ||| || Sbjct 317957 AGAAGGCC---------TTGTACATCTGCCAGATGTCTTGGTATGCAATGGG 317999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632404528089600