Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq23020 123 2e-23 seq9583 96.9 3e-15 >seq23020 Length=748909 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 60745 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 60804 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||||| || || || ||||||||||| Sbjct 60805 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCA 60864 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||||||||| ||||||||| |||||| || || ||||| Sbjct 60865 GCAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCTGTCTGACTACAA 60924 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 60925 CATCCAGAAGGAGTCCACTCTGCACCTCGTCCTCCGTCTCAGGGGAGG 60972 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 60974 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 61033 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || || ||||||||||| Sbjct 61034 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAG 61093 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| |||||| | |||||||| Sbjct 61094 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAAC 61153 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 61154 ATCCAGAAGGAGTCCACCCTGCA 61176 >seq9583 Length=785227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || ||||||| | ||||||||| | Sbjct 66950 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTGGAGCCCAG 67009 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||| | || || || ||||||||||| Sbjct 67010 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACGAGGAGGGCATCCCACCTGACCA 67069 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| | | | || || ||||| Sbjct 67070 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACGTTCTGTCTGACTACAA 67129 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 67130 CATCCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCAGGGGAGG 67177 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||| || |||| || ||||||| | ||||||||| | Sbjct 67179 ATGCAGATCTTCGTGAAGATCCTGTCCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 67238 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| || ||| |||| || ||| ||||| ||||| || ||||||||||| Sbjct 67239 AACACCATTGAGAACGCGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGACCAG 67298 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| | | | ||||||| | |||| || || ||||| Sbjct 67299 CAGAGGCTGATCTTCGCTGGCAAGCCACTGGAAGATGGCCACACTCTGTCTGACTACAAC 67358 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 67359 ATCCAGAAGGAGTCCACCCTGCA 67381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432509543073440