Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq14035 170 2e-37 seq26070 116 4e-21 seq13819 100 3e-16 seq2702 100 3e-16 >seq14035 Length=1410301 Score = 170 bits (188), Expect = 2e-37 Identities = 352/516 (68%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| ||||||| | || |||||| ||||| | | ||| |||| | || |||| Sbjct 226211 TTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGGCAA 226152 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||| || ||||| || |||| || | || | |||||| ||||| | || || Sbjct 226151 AGTCACAGTGCAAACCCTCATCTC-TGCTGATAAGTTCATTGGAAAATGTGAGGCCGGGC 226093 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | |||||||| |||||||||||| |||||||| |||||| ||||||||| || || ||| Sbjct 226092 ATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCT 226033 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 ||||| |||||| || ||| |||||| | || ||| | | || || ||| Sbjct 226032 TCCAC-AATGCAAAAGCTGCAACACGTTCTCC---ATATGC--AGCTTCT--TGTCCCAA 225981 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || ||||| || || ||||| | |||||| | ||||| || | ||||| || Sbjct 225980 CGCAAGGCCCAGTCAGC---CTTCTTCACACAAGGCATCGTTTCAATGACATTAAAGAGA 225924 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | || | || | |||||| | |||| || || | ||| ||| |||| ||| Sbjct 225923 AATTCCCTTTCTTTGGAATCT----TTAATGTGTCAATAAGAAGACTGTACGTTTCGGAA 225868 Query 93398 TGGACA----TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 | | | || |||| |||| ||||| || |||||||| | |||||||| || | Sbjct 225867 CGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAATTTA 225808 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 | |||||| |||| ||| || | |||||||| ||||| ||||| |||||||| Sbjct 225807 AAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGCAAA 225748 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 ||||||| | ||| |||||||| | |||| || Sbjct 225747 GAAAGCCAGAACATGGGATATAAAATCTCTCTCTTC 225712 >seq26070 Length=15207027 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| ||||| | ||| || | |||||||||||||||||||||||||||||| || Sbjct 5605364 CTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTGAGCCAAAATATTGATGC 5605423 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || |||| |||||| Sbjct 5605424 AAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCTACAACACGTTC 5605477 >seq13819 Length=2138633 Score = 100 bits (110), Expect = 3e-16 Identities = 222/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| | |||||||||||||| | || ||| | ||||||||||| || |||||||| | Sbjct 1575175 AGACAGTACATTTCAGAATGTATGTTTTCCGTGGCAATTTGGAAGCCATAGAAACAGCGG 1575116 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 |||| || || || |||||||| |||| ||| || | |||||||| ||| | Sbjct 1575115 GCTTATGTAATTTGAACTTCTTGGCTGAATCGCTCCACTACGTTTTCATTTACTGTGTGG 1575056 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||| ||| |||| |||||| ||| || ||||| | |||| || ||| || Sbjct 1575055 TCGCTCGCTTCAAAGGAAGCCA--GAATGAGATACAAAATATCTCTCTTCGGGTTTCAGG 1574998 Query 93560 TTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 ||||| | |||| || || || ||||| || || || | ||||||| | Sbjct 1574997 GCTTCCCAGTGCTGGAT--GTCCTTGGAGAGATCTACCTCCTCAGCTGTCCAAACGGGGT 1574940 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 | | ||||| |||||||| | ||| || || ||||||| | | || || | | || | Sbjct 1574939 CCTTAGCTTTCTTGTACATCTTCCAGATATCATGATATTCACTGGGGAAGAAAAGGAAGC 1574880 Query 93678 GATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | | ||||| ||||| | || ||| || Sbjct 1574879 -ACTGGGGTTTTCTTTCAATAGTGGCACT 1574852 >seq2702 Length=368809 Score = 100 bits (110), Expect = 3e-16 Identities = 342/530 (65%), Gaps = 46/530 (9%) Strand=Plus/Plus Query 93168 GTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTG 93227 ||||||||||||| || | ||| |||||| ||||||||| || || ||||| || || | Sbjct 317542 GTTTCTTGAGCCAGAACAGTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCGACAGCAG 317601 Query 93228 CAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCC 93287 |||| || |||| | |||| || | | || | | || | ||| Sbjct 317602 CAAAAGCTACAACATGTTCTCCATAGGTAGC--------------TTCTTTGTC---CCC 317644 Query 93288 AATCGGCTTTTTTCTTAATACAAGGT--AGT-GTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||| ||| || || ||| ||||| || || || || || | || | Sbjct 317645 AATCC-----------AATGCAGGGCCCAGTTGTTTCAATGGCATTGAAGAGAAATTCCC 317693 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 |||| |||||| ||||| || || || ||| |||||||||||||||| || Sbjct 317694 TTTCGTTGGAATCTTTAATGTAAGTGTCAATACGAAGACTATACATTTCAGAATGGCAAT 317753 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 | ||||| ||||||||||| || |||||||| | |||| | || || |||||||| Sbjct 317754 T-TCCATGGCAATTTGGAAGCCATAGAAACAGTAGGTTTCCATAATTTGAACTTCTTGGC 317812 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 ||| || | | |||||||| |||| ||||| ||||||| ||| || | Sbjct 317813 TGAATTGCTGCATCAAGTTTTCATTTACTAGGCCATCACTCACTGCAAAGGAAGTCAGAA 317872 Query 93525 TATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAATCGGATAGATCTTTT 93583 |||| ||||| || | || | || ||| ||| | ||||| | | | || || Sbjct 317873 TATGAGATATAAGATATCTCCCTTCTGGCTTCAAGGAT-TCCCAGT--GCT-TTTCCTTG 317928 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCAT 93643 ||||||| || || || | |||||||| | || |||||||| | ||| Sbjct 317929 GAAAGATTCACCTCCTCCGCTGTCCAAAAGAAGGC---------CTTGTACATCTGCCAG 317979 Query 93644 ATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 |||||||| ||| ||| || | ||||| || | | |||| ||||| Sbjct 317980 ATGTCTTGGTATGCAATGGGGGAGATGACGAAGCACTGGAGGTTCTCTTT 318029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555782049258240