Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23020 105 6e-18 >seq23020 Length=748909 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 60740 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 60799 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || | | || || || || ||||||||||| || ||||| Sbjct 60800 CCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCT 60859 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||||||| |||| ||| |||||| | || || Sbjct 60860 GACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCTGTCTGAC 60919 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || ||||| Sbjct 60920 TACAACATCCAGAAGGAGTCCAC 60942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| | Sbjct 60974 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 61033 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || ||||| || || Sbjct 61034 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAG 61093 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || |||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 61094 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAAC 61153 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 61154 ATCCAGAAGGAGTCCACC 61171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418935230345440