Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14035 100 5e-16 seq29155 84.2 4e-11 >seq14035 Length=1410301 Score = 100 bits (110), Expect = 5e-16 Identities = 184/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGT 42781 || || || |||||||| || || | || || || || |||||||||||| | ||| Sbjct 226028 GTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAATGAGGA 226087 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||||||| ||||| || || || ||||| |||||||| || ||||| |||| | Sbjct 226088 CT-GATGCCCGGCCTCACATTTTCCAATGAACTTATCAGCAGAGATGAGGGTTTGCACTG 226146 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||| || ||||| | ||||| ||||| || || || || | || Sbjct 226147 TGACTTTGCCTGTCTGATGTTC---AAGCACCTGGTACACAAACCATCAGAGCAGAGAGT 226203 Query 42902 CCGGG---CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 || |||| |||| |||| ||| ||| | | ||||| |||||| | || | | Sbjct 226204 AAAGGAAACCATTATCA---AGGCTGTGAGGATAGGGCAGGAGCTCCTCATGGAGGCTTT 226260 Query 42959 GCCCGTGTCCCTGGTCGGCATGAAC 42983 ||| ||| || | || |||||| Sbjct 226261 GCCTGTGAAACTCATTGGGATGAAC 226285 >seq29155 Length=1778819 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | |||| |||| || || || ||||| ||||||||||| |||||||| Sbjct 1086506 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTT 1086447 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||| ||| || ||| ||| ||| |||| || |||||||||||| Sbjct 1086446 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATG 1086396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942509826101760