Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq15815 96.9 3e-15 >seq15815 Length=3425397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 207/307 (67%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 20275 ATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTG 20334 ||||||||| ||||| || || || |||| ||| | |||| |||||||| || || || Sbjct 2366534 ATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCTCCTGACCTCTGGTAAAGTTG 2366593 Query 20335 ACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGC 20394 ||||| ||||| || | | ||||| || | || | | ||||| | | ||||| Sbjct 2366594 GCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAGGACTTGACAAGAAGCCAGCGC 2366653 Query 20395 CATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATC-GTGCGGAT 20453 ||||| | | || |||||||| |||||||| ||||||||| || ||| | Sbjct 2366654 CATCAGAGGAAGATCTTTTGGGTTCCAGGCACACAT---GATTCTTCTGTCAGTG----T 2366706 Query 20454 TATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513 | |||| || ||| | || | | || | ||| || || |||| || |||| Sbjct 2366707 TGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCTGCTCCTTGACCTGAGTAATCAG 2366766 Query 20514 CATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCA 20573 |||| || ||| | || ||||| ||| ||||||||||||| ||||| || | || Sbjct 2366767 AATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCACTGGAAACCATAAACTGGACTCA 2366826 Query 20574 AATCCCC 20580 ||||| Sbjct 2366827 GGTCCCC 2366833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440517772611840