Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq23020 140 8e-28 seq9583 120 7e-22 seq73829 113 1e-19 seq33490 113 1e-19 seq10252 113 1e-19 seq28653 100 7e-16 seq15461 96.9 8e-15 >seq23020 Length=748909 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| || | ||| || || ||||| || || || | Sbjct 61200 CCACCCCGGAGACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGAT 61141 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || ||||||||||| | ||| || | |||| Sbjct 61140 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGG 61081 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | ||||| | || || Sbjct 61080 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 61021 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 61020 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 >seq9583 Length=785227 Score = 120 bits (132), Expect = 7e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | ||| | || ||||| || | ||| || || ||||| || ||||| | | Sbjct 67404 CACCCCTGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACA 67345 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367 | ||| | || ||||| | | | || || ||||||||||| | ||| || | ||||| Sbjct 67344 GAGTGTGGCCATCTTCCAGTGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGA 67285 Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427 | ||||| || |||||||| || || ||| |||| || || | | ||| | || |||| Sbjct 67284 TGCCTTCCTTGTCCTGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTT 67225 Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| |||| ||| |||| ||||| |||||||| Sbjct 67224 CCAGGGTGATGGTCTTGCCGGACAGGATCTTCACGAAGATCTGCAT 67179 >seq73829 Length=246 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||| || || ||||| || ||||| | || ||| | || ||| Sbjct 244 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCT 185 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | | || || ||||||||||| | ||| || | |||||| ||||| || ||| Sbjct 184 TCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCC 125 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || ||| |||| || || | | ||| | || ||||| || ||||| ||| Sbjct 124 TGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTC 65 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| ||| |||| ||||| |||||||| Sbjct 64 TTGCCGGACAGGATCTTCACGAAGATCTGCAT 33 >seq33490 Length=7594977 Score = 113 bits (124), Expect = 1e-19 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 4306963 CCACCACGAAGTCTTAACACAAGATGAAGGGTGGACTCCTTTTG-ATGTTGTAGTCAGAC 4307021 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| || || || || || || || |||||||| | || ||| | || Sbjct 4307022 AAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGA 4307081 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || |||| ||||| | | ||| || Sbjct 4307082 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTATATAGTGTATGAGGGTTCAACC 4307141 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| |||| |||||||| || || ||||| || || |||||||| Sbjct 4307142 TTGAGCATGATGGTCTTCCCTGTAAGGGTCTTTACAAAAATCTGCAT 4307188 >seq10252 Length=5655956 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| ||| | ||||||| || || ||||| | ||| ||||| | Sbjct 4525574 CCACCACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGAC 4525633 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| || || | || || || || |||||||| || ||| | || Sbjct 4525634 AAAGTTCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGA 4525693 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || ||||||||| || | ||| || Sbjct 4525694 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAACC 4525753 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || | || ||||| | ||| |||||||| Sbjct 4525754 TCGAGTGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCAT 4525800 >seq28653 Length=4296906 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 ||||| | ||||| || || |||||||| || ||| | || |||||||| ||| Sbjct 624361 TCTTCCAGCTGTTTCCCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTA 624302 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || ||||| || |||||| ||| | | ||| | ||||||||||| Sbjct 624301 TCCTGGATCTTGGCTTTTACATTTTCTGTAGTGTGCAAGGTTTCAATCTCGAGCGTGATG 624242 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| ||||| |||||||| Sbjct 624241 GTCTTCCCTGTAAGGGTCTTTACGAAAATCTGCAT 624207 >seq15461 Length=7213747 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || | | ||||||| ||| || |||| || || ||||| | Sbjct 6276415 CCACCACGAAGCCTCAACAGAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGAC 6276356 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| || || || || || | || |||||||| | || ||| | || Sbjct 6276355 AAAGTTCATCCATCCTCCAACTGCTTATCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 6276296 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||| |||| ||||||||||| || ||||| || |||||||||| || | ||| || Sbjct 6276295 ATTTCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 6276236 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | |||| |||| |||| ||| | || ||||| || || |||||||| ||| Sbjct 6276235 TTGAGCCTGATGGTCTGCCCCATAAGGGTCTTTACTAAAATCTGCATCATG 6276185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177312042833728