Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq16386 113 4e-20 seq23020 105 7e-18 seq9583 93.3 4e-14 seq61872 89.7 5e-13 seq33511 86.0 6e-12 >seq16386 Length=4700455 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| ||||| Sbjct 632467 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 632408 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| ||| | || ||| |||||||||||| | || || ||||| || Sbjct 632407 TCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCC 632348 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 632347 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 632288 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 632287 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||| |||| || | | |||||| ||||||| || |||||||| Sbjct 631312 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631253 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| | || || ||||| || || || ||| ||| Sbjct 631252 GCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631193 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 631192 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631133 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 631132 TTCACGAAGATCTGCATT 631115 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||| |||| || | | |||||| ||||||| || |||||||| Sbjct 631540 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631481 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || ||| |||||||||||| | || || ||||| || || || ||| ||| Sbjct 631480 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631421 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||||| || ||||| || | || | ||||||||| |||| || Sbjct 631420 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631361 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 631360 TTCACGAAGATCTGCAT 631344 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||| |||| || | | |||||| ||||||| || |||||||| Sbjct 631768 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631709 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || ||| |||||||||||| | || || ||||| || || || ||| ||| Sbjct 631708 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631649 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||||| || ||||| || | || | ||||||||| |||| || Sbjct 631648 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631589 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 631588 TTCACGAAGATCTGCAT 631572 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||| |||| || | | |||||| ||||||| || |||||||| Sbjct 631996 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 631937 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || ||| |||||||||||| | || || ||||| || || || ||| ||| Sbjct 631936 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 631877 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||||| || ||||| || | || | ||||||||| |||| || Sbjct 631876 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 631817 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 631816 TTCACGAAGATCTGCAT 631800 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||| |||| || | | |||||| ||||||| || |||||||| Sbjct 632224 GTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCT 632165 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || ||| |||||||||||| | || || ||||| || || || ||| ||| Sbjct 632164 GCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 632105 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||||| || ||||| || | || | ||||||||| |||| || Sbjct 632104 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 632045 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 632044 TTCACGAAGATCTGCAT 632028 >seq23020 Length=748909 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || ||||||||||| | | ||||| | || Sbjct 61186 AAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATC 61127 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||||||||| | || |||| ||||||||| || || || || || || || Sbjct 61126 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 61067 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || || | || ||||| || | || | ||| Sbjct 61066 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 61007 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 61006 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||| |||||| Sbjct 60942 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGTTTGCCG 60883 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || || || || || || || ||| Sbjct 60882 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 60823 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||||||||||| || Sbjct 60822 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60763 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 60762 TTCACGAAGATCTGCATTTT 60743 >seq9583 Length=785227 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGC--GACGGTGCGCGCGTCTTCAAGCTGCTTGC 64304 || || || || || |||||||| || | || ||| || | ||||| |||||||||| Sbjct 67147 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTG-GC-CATCTTCCAGCTGCTTGC 67090 Query 64305 CGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCT 64364 ||||| | || |||| ||||||||| || || || || || | || || || || || Sbjct 67089 CGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTGGCCT 67030 Query 64365 TTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | || ||| | || || | || |||||||| | || | ||||||||| |||| | Sbjct 67029 TCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTCAGGG 66970 Query 64425 TTTTTACGAAAATTTGCATTTT 64446 | || ||||| || |||||||| Sbjct 66969 TCTTCACGAAGATCTGCATTTT 66948 >seq61872 Length=227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| ||||| Sbjct 56 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 115 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || || || || || || || Sbjct 116 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 175 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 || || ||| ||| || ||| | || |||| || ||||| || Sbjct 176 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTC 222 >seq33511 Length=8354299 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||| | | || || |||||||| ||| Sbjct 8199632 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCCTCCAGCTGCTTTCCG 8199573 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 | || |||||||||||||| ||| | || ||||| || || | || || ||| Sbjct 8199572 GTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTCCTAGATCTTGGCCTTG 8199513 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | ||| | ||||||||| |||| || Sbjct 8199512 ACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTC 8199453 Query 64427 TTTACGAAAATTTGC 64441 || || || || ||| Sbjct 8199452 TTCACAAAGATCTGC 8199438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498676888093440