Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq33490 86.0 4e-12 >seq33490 Length=7594977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||||| || | ||||||||| || || ||||| |||||||| || Sbjct 4306963 CCACCACGAAGTCTTAACACAAGATGAAGGGTGGACTCCTTTTG-ATGTTGTAGTCAGAC 4307021 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| | || || || || || ||||| | |||| | || || || ||| Sbjct 4307022 AAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGA 4307081 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||||| ||| |||||| | ||| || Sbjct 4307082 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTATATAGTGTATGAGGGTTCAACC 4307141 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | | | ||||| || ||||| || || ||||||||||| ||||| Sbjct 4307142 TTGAGCATGATGGTCTTCCCTGTAAGGGTCTTTACAAAAATCTGCAT 4307188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356716968712160