Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23020 104 2e-17 >seq23020 Length=748909 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| ||||||||||| || Sbjct 60942 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGTTTGCCG 60883 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || ||| Sbjct 60882 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 60823 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 60822 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60763 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 60762 TTCACGAAGATCTGCAT 60746 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || || Sbjct 61170 GTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 61111 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| | |||||| || || || ||||||||||||||| ||| || ||| Sbjct 61110 GCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 61051 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 61050 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 60991 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 60990 TTCACGAAGATCTGCATGCCT 60970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474579659850240