Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq33482 156 6e-33 seq12175 122 1e-22 >seq33482 Length=11402808 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || | | |||| ||| |||| || || || || ||| |||| ||||| || || Sbjct 7132364 GTCTGGAATAGCCGCTCATCATCCCACTCAGGATGCTCTTGTCTGAGCACATCACACACT 7132305 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| || || | ||||| |||||||| |||||||| ||||| ||||| | |||||| Sbjct 7132304 CTGTTATGCTCCCGAAGCCAGATGGTGGCATACATCATCAAACCAGGCACCAGACCAAAG 7132245 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||||||||| | || || | || | |||| ||| | | Sbjct 7132244 ACCTCCTGCCCCACGGCAAAGCGCAGGTGCTCAGGGGTATGAGGTGGGTACATCATCTCC 7132185 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| ||||| ||||||| || || |||||||||| Sbjct 7132184 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATAACCT 7132136 Score = 154 bits (170), Expect = 2e-32 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || || || |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 7134180 AAGGGGCAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGAGGCAGTGTTGATGATC 7134121 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| || || ||||| Sbjct 7134120 TTAAAACCTACTTCTCCCCCAAAAGTGCTTGGCTTCCAGTAGTGAGGAGAACAGATAGGA 7134061 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 7134060 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 7134001 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | || || || ||||| || | | | ||| ||| || || | ||| || | | Sbjct 7134000 ATAGCATCTGGGCGAGGCTTTTCTACCAGAAGGGCAGGGTACAGCTCCATAGCATCAATG 7133941 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| || |||||||| ||||| || |||||||| ||| Sbjct 7133940 TCACCATAGAGAGCCTCCAACTCTGCAGCCATTTCCTTCTCTCCT 7133896 Score = 122 bits (134), Expect = 1e-22 Identities = 184/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||| | || || ||||| |||||||| || ||||| | ||| || | || || Sbjct 7132946 CCGGCCAGCATTTTGCCTGGTGAATGATTCAACGAACTGGGCAAGTCCATGTTCTATCAG 7132887 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || |||||||| | || |||| | |||| | ||| | ||| |||| Sbjct 7132886 TATAGAGTTGTTGTAGAGAAACTGTTTAAAGTTGTACTCCTGGTCTTCAATGTGAAAGGT 7132827 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | ||||||| ||||||| || |||||||| || || || |||||||| Sbjct 7132826 GTCAGGCAGCAGGGGATGCCAGTGGTAGAGTGTGTTGAACTCAGCGGCAATGCGGTTCTG 7132767 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| || | ||| ||| || | ||| |||||||| | || | |||||| || Sbjct 7132766 GTACTGGAACTGCTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAA 7132709 Query 9670 CCGCTGAGTTGCTGGACATA 9689 || || | ||||| || || Sbjct 7132708 CCACTTAAATGCTGCACGTA 7132689 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| |||| ||| ||||| || || ||||| | || ||| ||||| Sbjct 7130709 CTTACCCCATGACCCAGTCCCCGGGTGAAGGCAGGACCTCGTTTCTGGTCTGTCTTAAAA 7130650 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || || || || || | || || |||||||||| ||| ||||| ||||||||| Sbjct 7130649 AACTGATGCGTGAAATGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCTTGGGGATCG 7130590 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || |||||| | || || | | ||||||| || || Sbjct 7130589 GGGATGAACTTTCTTCTTAAAAGAACTTTTTGCAGAACTTCTTTTGAATCAGGAAG 7130534 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| || |||||| | || ||||| || | ||| || Sbjct 7129957 TCACCTTTCACACCCATGGGAGTTGGACAGTCATCTGCTACAGGAGGAAGGGCTCTGGTG 7129898 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||| | ||||||||||||| | || || Sbjct 7129897 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGTTTTTGTAGCCATAATGCACATTATAAGTT 7129838 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 7129837 GGTGGACTGTCAATCAAATGTGATCTGGCT 7129808 >seq12175 Length=10297911 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || ||||| |||||||| ||||||||| | || ||||||||| ||| | | ||| Sbjct 106090 TCACCACCGAAAGTGCTGGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGA 106149 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | |||||| |||||||| | ||| || || ||||| || ||||||| || Sbjct 106150 CCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTAGGC 106209 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 | ||||| | | || |||| |||| || | || |||| ||| ||||| || Sbjct 106210 TGGCACTTTTCAAGAAGCAACCCAGGATAGAACTCCAATGCGTCGATGTCTCCATACAGC 106269 Query 9143 GCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 | |||||||| ||||| ||||||||||| ||| ||| Sbjct 106270 TCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTGCAA 106306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722325994118400