Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq23020 145 9e-30 seq9583 136 4e-27 seq16386 131 2e-25 seq17823 120 3e-22 seq33511 114 1e-20 seq61872 107 2e-18 >seq23020 Length=748909 Score = 145 bits (160), Expect = 9e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || | | ||| | || || |||| || |||||| ||||| |||| Sbjct 61208 ATTAATAGCCACCCCGGAGACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 61149 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 | || ||||||||||| | || || ||||||||||||||||| |||| | |||||||| Sbjct 61148 AATCAGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGT 61089 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 | | || | || |||||||||| |||||| ||| | || | | |||||||| | Sbjct 61088 CAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGG 61029 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 61028 GCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 >seq9583 Length=785227 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | || || |||| || |||||| ||||| |||||||| | Sbjct 67179 TGCCTCCCCTGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 67120 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||| | | | || || |||||||||||||| || |||| | ||||||||| | | Sbjct 67119 ACAGAACGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTG 67060 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| |||| |||||| ||| | || | | |||||||| | |||| Sbjct 67059 GGATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 67000 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 66999 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 66947 >seq16386 Length=4700455 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| ||||||||||| || ||||| |||| || Sbjct 632465 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTC 632406 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| ||||||||||| | | || ||| |||||| Sbjct 632405 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632346 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| || | ||||| |||| |||||||| || Sbjct 632345 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632286 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 632285 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 129 bits (142), Expect = 7e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 631325 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631266 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| | ||||||||||| | | || ||| |||||| Sbjct 631265 CAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631206 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| || | ||||| |||| |||||||| || Sbjct 631205 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631146 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| ||||| || || || ||||| |||||| Sbjct 631145 GCCAGTCAGGGTCTTCACGAAGATCTGCATT 631115 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 631553 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631494 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| ||||||||||| | | || ||| |||||| Sbjct 631493 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631434 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 631433 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631374 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 631373 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 631781 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631722 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| ||||||||||| | | || ||| |||||| Sbjct 631721 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631662 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 631661 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631602 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 631601 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 632009 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 631950 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| ||||||||||| | | || ||| |||||| Sbjct 631949 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 631890 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 631889 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 631830 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 631829 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||| || |||||| ||||| |||||||||| || ||||| |||| || Sbjct 632237 CACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTC 632178 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| ||||||||||| | | || ||| |||||| Sbjct 632177 CAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTG 632118 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 632117 GATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 632058 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 632057 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq17823 Length=3576200 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||| | | | || || ||||||||||| | ||| Sbjct 944360 CTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCTTCCAGCTGCTTGCCCGTGAA 944301 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| ||| || ||| | | Sbjct 944300 GATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTGGCCTTCACGTT 944241 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 944240 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 944181 Query 46582 AAAGATTTGCATTTTG 46597 |||||| || ||||| Sbjct 944180 AAAGATCTGTGTTTTG 944165 >seq33511 Length=8354299 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46380 GCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGT 46439 ||| |||||| | || || ||| || ||||| ||||||||||| || || | || | Sbjct 8199649 GCAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCAT 8199590 Query 46440 CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499 | || |||||||| |||| || |||| ||||||||||| | | | || ||||||| Sbjct 8199589 CCTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGT 8199530 Query 46500 CCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 || |||||| ||||| || | | || || || | ||||| || | ||||||| Sbjct 8199529 CCTAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGG 8199470 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | ||||| ||||| || || |||||||| ||| | ||| Sbjct 8199469 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCGTCTTG 8199432 >seq61872 Length=227 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| ||||||||||| || ||||| |||| || Sbjct 58 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTC 117 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| | ||||||||| | || | || |||||||||| Sbjct 118 CAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 177 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCA 46550 |||||| ||||| || | | ||||| || | ||||| |||| Sbjct 178 GATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564143420171520