Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq16386 134 1e-26 seq23020 123 2e-23 seq17823 107 2e-18 seq14035 107 2e-18 seq9583 105 7e-18 seq61872 104 2e-17 seq73829 91.5 1e-13 >seq16386 Length=4700455 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 632256 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 632315 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||||||||| || | | ||||||| Sbjct 632316 GACACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 632374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| || | || ||||| || ||||| |||| |||||||| ||||||||| Sbjct 632375 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAA 632434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || ||||| ||||||| || Sbjct 632435 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCG 632470 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 631115 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 631174 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | ||| |||| ||||||||||| || | | |||||| Sbjct 631175 TGACACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACC 631233 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || ||||| || ||||| |||| |||||||| |||||||| Sbjct 631234 AGCAGAGGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACA 631293 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||| ||||| | || |||| ||||| Sbjct 631294 TCATCCAGAAGGAGTCCACCCTGCCCCTGGTG 631325 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 631344 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 631403 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||||||||| || | | ||||||| Sbjct 631404 GATACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 631462 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| || | || ||||| || ||||| |||| |||||||| |||||||| Sbjct 631463 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAT 631522 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||| ||||| | || |||| ||||| Sbjct 631523 CATCCAGAAGGAGTCCACCCTGCCCCTGGTG 631553 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 631572 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 631631 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||||||||| || | | ||||||| Sbjct 631632 GATACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 631690 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| || | || ||||| || ||||| |||| |||||||| |||||||| Sbjct 631691 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAT 631750 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||| ||||| | || |||| ||||| Sbjct 631751 CATCCAGAAGGAGTCCACCCTGCCCCTGGTG 631781 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 631800 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 631859 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||||||||| || | | ||||||| Sbjct 631860 GATACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 631918 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| || | || ||||| || ||||| |||| |||||||| |||||||| Sbjct 631919 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAT 631978 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||| ||||| | || |||| ||||| Sbjct 631979 CATCCAGAAGGAGTCCACCCTGCCCCTGGTG 632009 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 632028 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 632087 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||||||||| || | | ||||||| Sbjct 632088 GATACCATTGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 632146 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||| || | || ||||| || ||||| |||| |||||||| |||||||| Sbjct 632147 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAT 632206 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 |||||| ||||| | || |||| ||||| Sbjct 632207 CATCCAGAAGGAGTCCACCCTGCCCCTGGTG 632237 >seq23020 Length=748909 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 60743 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 60802 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||| ||||| || || | || Sbjct 60803 AGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGA 60861 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||||||||| || || | ||||| || ||||| Sbjct 60862 CCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCTGTCTGACTA 60921 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || ||||| | || || ||| | || || ||| Sbjct 60922 CAACATCCAGAAGGAGTCCACTCTGCACCTCGTCCTCCGTCTCAGGGGAGGC 60973 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 60974 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 61033 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 61034 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCA 61092 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 61093 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAA 61152 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || ||||| | || || ||| Sbjct 61153 CATCCAGAAGGAGTCCACCCTGCACCTCGTCCTTCGT 61189 >seq17823 Length=3576200 Score = 107 bits (118), Expect = 2e-18 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||| || || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 944166 AAAACACAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 944225 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||| || || |||||| | || Sbjct 944226 AGCGACACCATTGAGAACG-TGAAGGCCAATATCCAGGACAAGGATGGCATTCCCCCTGA 944284 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC--GAC 38417 ||| ||| |||| || | | ||||||| |||||||| || | || ||||||| ||| Sbjct 944285 CCAGCAGAGGCTGATCTTCACGGGCAAGCAGCTGGAAGATG-GC-CACCCTCTGTCTGAC 944342 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||||| ||||| | || ||||| Sbjct 944343 TACAACATCCAGAAGGAGTCCACCCTGCA 944371 >seq14035 Length=1410301 Score = 107 bits (118), Expect = 2e-18 Identities = 304/465 (65%), Gaps = 19/465 (4%) Strand=Plus/Minus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 || |||| ||||||||||||| || |||||||| || ||||| ||||| || ||| Sbjct 226182 TGTACCAGGTGCTTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTG 226123 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || ||||| ||| || || | ||||||||| || || | ||| |||||||| ||||| Sbjct 226122 ATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATT 226063 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | || ||| || |||||||||| || || || || ||||| | | || || Sbjct 226062 GATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC-AATGCAAAAGCTGCAACACGTTCT 226004 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110 || | | ||||||| | ||| |||| ||||| || ||||| || || Sbjct 226003 CCATATGCAGCTTCTT-------GTCCCAACGCAAGGCCCAGTCAGCCTT---CTTCACA 225954 Query 133111 CACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG 133170 || ||||||||||| ||| | || ||| || ||| ||| | | | | | Sbjct 225953 CAAGGCATCGTTTCAATGACATT----AAAGAGAAATTCCCTTTCTTTGGAATCTTTAAT 225898 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGT----ACGTTCTCCATGGCGATTTGAAA 133226 ||||| || || ||| |||| || || | ||| |||| ||| | ||| | Sbjct 225897 GTGTCAATAAGAAGACTGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAG 225838 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || || || || || || | | | |||||| ||| | ||| |||| || Sbjct 225837 GCCATAGAAACAGCGGGCTTCCGTAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTT 225778 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 ||| || || ||||| || || || || || || ||||| || || Sbjct 225777 TTCATTTACTATGCCATCACTCGCTGCAAAGAAAGCCAGAACATG 225733 >seq9583 Length=785227 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 66948 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTGGAGCCC 67007 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||| | ||||| || || | || Sbjct 67008 AGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACGAGGAGGGCATCCCACCTGA 67066 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | | | || ||||| Sbjct 67067 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACGTTCTGTCTGACTA 67126 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || ||||| | || || ||| | || || ||| Sbjct 67127 CAACATCCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCAGGGGAGGC 67178 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || | || | ||||| ||||||||| | || || ||| ||| | Sbjct 67179 ATGCAGATCTTCGTGAAGATCCTGTCCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 67238 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| || | || |||| ||||| || || || || | ||||| Sbjct 67239 AACACCATTGAGAACGCG-AAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGACCA 67297 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| | ||||| || | | ||| || |||||||| Sbjct 67298 GCAGAGGCTGATCTTCGCTGGCAAGCCACTGGAAGATGGCCACACTCTGTCTGACTACAA 67357 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 |||||| ||||| | || ||||| | || || ||| | || || Sbjct 67358 CATCCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGTCTCAGGGG 67402 >seq61872 Length=227 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 ||| |||| ||||| ||||| || ||| | ||||| ||| |||| || | || ||||| Sbjct 184 AAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAA 125 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| |||| |||||||| ||||||||||||||| ||||| | || ||||| Sbjct 124 GCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCA 65 Query 38447 TTTGGTGCTGCG 38458 ||||||| || Sbjct 64 CCTGGTGCTCCG 53 >seq73829 Length=246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || | || | ||||| ||||||||| | || || ||| ||| | Sbjct 33 ATGCAGATCTTCGTGAAGATCCTGTCCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 92 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| || | || |||| ||||| || || || || | ||||| Sbjct 93 AACACCATTGAGAACGCG-AAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGACCA 151 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| | |||||| || | | ||| || |||||||| Sbjct 152 GCAGAGGCTGATCTTCGCTGGCAAGCCGCTGGAAGATGGCCACACTCTGTCTGACTACAA 211 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||| | || ||||| Sbjct 212 CATCCAGAAGGAGTCCACCCTGCA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499203865251840