Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq31371 118 4e-21 seq23734 95.1 5e-14 seq10252 91.5 6e-13 seq4665 89.7 2e-12 seq12752 87.8 7e-12 seq18004 86.0 2e-11 >seq31371 Length=817987 Score = 118 bits (130), Expect = 4e-21 Identities = 446/690 (65%), Gaps = 15/690 (2%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| || || || || || || ||||||| ||||| || ||||| | ||| |||| || Sbjct 504061 AGCTATAGGCATCGACCTGGGCACCACCTACTCATGCGTGGGTGTGTTCCAGCATGGCAA 504120 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----T 451028 || || || || || |||||||| || || || || || || | || || | Sbjct 504121 GGTGGAGATCATTGCCAATGACCAGGGCAACCGCACGACCCC--CA--GCTATGTGGCCT 504176 Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCC 451087 | || || |||| | || | || | || || || | | | |||| ||| || Sbjct 504177 TCACCGACACAGAGCGCCTGATTGGAGACGCGGCCAAGAACCA-GGTAGCCATGAATCCC 504235 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 | ||||| || | |||||| |||||| | |||||| | | || | | ||| | ||| Sbjct 504236 CAGAACACTGTTTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAACGATCCTGTTGTG 504295 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || || | ||| | | | | | | || | ||| || ||| |||||| | | Sbjct 504296 CAGTCCGATATGAAACTTTGGCCATTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTA 504355 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | || || ||||| || ||| |||| ||||| ||||| || || ||||| Sbjct 504356 CTGGTGTCCTACAAAGGGGAGGAGAAAGCTTTCTACCCTGAGGAAATCTCTTCCATGGTG 504415 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA-GTTACTGATGCAGT 451326 || || || ||||| || || ||||| | | |||| | | | || || |||| || Sbjct 504416 CTGACAAAGATGAAGGAGACTGCAGAGGCTTTT-TTGGGCCACAATGTCACCAATGCTGT 504474 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 || ||||| || || ||||||||||| | ||||| || || || || || ||||| Sbjct 504475 CATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGACGCAGGTGT 504534 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||| || | ||||| || |||| || |||||||| ||||| ||||| | || || Sbjct 504535 GATTGCCGGACTCAATGTGCTGAGAATCATCAATGAACCCACAGCTGCTGCCATCGCCTA 504594 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || |||| ||| | | || | ||| || | | | |||||| | ||||| Sbjct 504595 CGGGCTAGATAAA--GGAGGTCAC-GGAGAGCGGCATGTCCTCATCTTTGATCTGGGTGG 504651 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 ||| || |||| || || || | || || |||||| | ||||| || ||||| || Sbjct 504652 AGGCACATTTGATGTGTCCGTCCTGACCATAGACGATGGGATCTTTGAGGTCAAGGCCAC 504711 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| || || || || || || || Sbjct 504712 TGCCGGTGACACACACCTGGGCGGGGAGGA 504741 >seq23734 Length=4385887 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTG--CATAAG 96106 |||||| | |||||||||||| || || || ||||| ||| || | || || | | Sbjct 3434978 TGCAATCTCTGGCACTAGGGGGTCATCGGGGTTTGGATCA--CATAGCAGTGAACAAATG 3435035 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 3435036 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGA 3435095 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | |||||||||| |||||||| ||| ||||| || ||| Sbjct 3435096 CAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTA 3435155 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| ||||| | | Sbjct 3435156 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGA 3435215 Query 96287 TAGGG 96291 || || Sbjct 3435216 TATGG 3435220 >seq10252 Length=5655956 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || || | || || || || || || || |||||| | | Sbjct 4525800 ATGCAGATTTTCATAAAGACCCTTATGGGAAAGACCATCACACTCGAGGTTGAACCTTTG 4525741 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || || || |||||||||||||||||||||||||| Sbjct 4525740 GACATTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 4525681 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || | || || || || || |||||| |||||||| | || || ||| Sbjct 4525680 CAAAAGCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGACGAACTTTGTCTGACTACAAT 4525621 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 4525620 GTTCAAAAGGAGTCTACCCTTCA 4525598 >seq4665 Length=8212873 Score = 89.7 bits (98), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||| |||||||||| Sbjct 2941233 GTTACCCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAAAGGCAAGCAACC 2941174 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGT 451404 |||||||| || ||||||||| | ||||| Sbjct 2941173 AAAGATGCTGGCACTATTGCTGGACTGAATGT 2941142 >seq12752 Length=2036514 Score = 87.8 bits (96), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| |||||| | ||||||||||| Sbjct 809337 GCCACTAAGGATGCTGGCCAAATATCTGGGCTAAATGTGCTTCGAGTGATTAATGAACCC 809396 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| ||||| |||| Sbjct 809397 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAATCTGAAGA 809437 >seq18004 Length=963510 Score = 86.0 bits (94), Expect = 2e-11 Identities = 171/252 (68%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 451198 GCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTC 451257 |||| | |||||||| | || ||| |||| | |||| ||| ||| ||||| | || Sbjct 649976 GCCCAAGGTTCAAGTAGACTACAAAAGTGAGATCAAAAGTTTCTATCCAGAAGAGGTGTC 649917 Query 451258 ATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTAC 451317 ||| ||||||| || || ||||| |||| |||||| || ||| | ||||| Sbjct 649916 TTCTGTGGTTCTAACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGAAAAGACTGTTAC 649857 Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 |||||| | | | || || ||||| ||| |||| | || | ||| ||||| ||||| Sbjct 649856 TGATGCTATGGTCCCAGTGCCAGCTTACTTCCATGACTCTCAGCAGCAGGCAACCAAAGA 649797 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| ||| || || | | ||| | | |||||| | |||||| || || ||||| Sbjct 649796 TGCTGGAACCATCACTAGCCTCGGTGTAC-TAGAATTACTGGTGAACCAACTGCTGCTGC 649738 Query 451438 TCTAGCATATGG 451449 | | || || || Sbjct 649737 TATTGCTTAGGG 649726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971795354273408